Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC15.43■□□□□ 0.06
Nr1i3O35627 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Nr1i3O35627 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Nr1i3O35627 AC121801.1-201ENSMUST00000225363 1899 ntBASIC15.42■□□□□ 0.06
Nr1i3O35627 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC15.42■□□□□ 0.06
Nr1i3O35627 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC15.42■□□□□ 0.06
Nr1i3O35627 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Nr1i3O35627 Gm5364-201ENSMUST00000216789 889 ntBASIC15.42■□□□□ 0.06
Nr1i3O35627 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC15.42■□□□□ 0.06
Nr1i3O35627 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC15.42■□□□□ 0.06
Nr1i3O35627 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC15.42■□□□□ 0.06
Nr1i3O35627 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
Nr1i3O35627 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
Nr1i3O35627 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Sbk2-205ENSMUST00000208109 1422 ntTSL 5 BASIC15.42■□□□□ 0.06
Nr1i3O35627 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC15.42■□□□□ 0.06
Nr1i3O35627 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Nr1i3O35627 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
Nr1i3O35627 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Nr1i3O35627 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Nr1i3O35627 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
Nr1i3O35627 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC15.41■□□□□ 0.06
Nr1i3O35627 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC15.41■□□□□ 0.06
Nr1i3O35627 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC15.41■□□□□ 0.06
Nr1i3O35627 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC15.41■□□□□ 0.06
Nr1i3O35627 AC131187.1-201ENSMUST00000224567 809 ntBASIC15.41■□□□□ 0.06
Nr1i3O35627 Cox7a2l-201ENSMUST00000025095 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Crygn-201ENSMUST00000047119 768 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC15.41■□□□□ 0.06
Nr1i3O35627 AC126549.2-201ENSMUST00000223997 1976 ntBASIC15.41■□□□□ 0.06
Nr1i3O35627 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
Nr1i3O35627 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Nr1i3O35627 Gm42934-201ENSMUST00000196920 1345 ntBASIC15.41■□□□□ 0.06
Nr1i3O35627 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Nr1i3O35627 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Nr1i3O35627 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Nr1i3O35627 Gm6756-201ENSMUST00000180647 1620 ntBASIC15.4■□□□□ 0.06
Nr1i3O35627 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Nr1i3O35627 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Nr1i3O35627 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Nr1i3O35627 Six3os1-205ENSMUST00000175913 791 ntTSL 3 BASIC15.4■□□□□ 0.06
Nr1i3O35627 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC15.4■□□□□ 0.06
Nr1i3O35627 Gm45683-201ENSMUST00000210825 1247 ntBASIC15.4■□□□□ 0.06
Nr1i3O35627 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Nr1i3O35627 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Nr1i3O35627 Gpr146-202ENSMUST00000053120 1040 ntBASIC15.4■□□□□ 0.06
Nr1i3O35627 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Nr1i3O35627 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Nr1i3O35627 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Nr1i3O35627 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Nr1i3O35627 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Nr1i3O35627 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Nr1i3O35627 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Nr1i3O35627 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Nr1i3O35627 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 87 ms