Protein–RNA interactions for Protein: S4R1M3

H2afb2, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb2S4R1M3 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Rprl2-201ENSMUST00000157150 290 ntBASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
H2afb2S4R1M3 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.11
H2afb2S4R1M3 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Dock4-201ENSMUST00000037488 8552 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Gm2810-201ENSMUST00000118681 990 ntBASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Gm11745-201ENSMUST00000121669 448 ntBASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
H2afb2S4R1M3 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Olfml2a-201ENSMUST00000057279 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Gm4995-201ENSMUST00000117247 432 ntBASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Gm27494-201ENSMUST00000184735 189 ntBASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Gm38225-201ENSMUST00000194001 393 ntBASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Ydjc-202ENSMUST00000115702 1713 ntTSL 5 BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC14.38□□□□□ -0.11
H2afb2S4R1M3 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms