Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Smco4Q9JIS3 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Gm15378-201ENSMUST00000121894 207 ntBASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Gm26571-201ENSMUST00000181399 666 ntBASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Mir6404-201ENSMUST00000183699 94 ntBASIC11.54□□□□□ -0.56
Smco4Q9JIS3 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Ces1h-201ENSMUST00000145041 1870 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Smco4Q9JIS3 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Slitrk3-201ENSMUST00000059407 3587 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Smco4Q9JIS3 Brd3-202ENSMUST00000077737 5272 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
Smco4Q9JIS3 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Smco4Q9JIS3 Gm37795-201ENSMUST00000194216 2459 ntBASIC11.52□□□□□ -0.56
Smco4Q9JIS3 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Smco4Q9JIS3 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Smco4Q9JIS3 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
Smco4Q9JIS3 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Smco4Q9JIS3 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
Smco4Q9JIS3 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Smco4Q9JIS3 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Smco4Q9JIS3 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Smco4Q9JIS3 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Smco4Q9JIS3 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Smco4Q9JIS3 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Smco4Q9JIS3 Sorcs1-205ENSMUST00000209413 4398 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Smco4Q9JIS3 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Smco4Q9JIS3 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC11.52□□□□□ -0.57
Smco4Q9JIS3 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC11.52□□□□□ -0.57
Smco4Q9JIS3 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC11.52□□□□□ -0.57
Smco4Q9JIS3 AC160980.1-201ENSMUST00000224136 970 ntBASIC11.52□□□□□ -0.57
Smco4Q9JIS3 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Smco4Q9JIS3 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Smco4Q9JIS3 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC11.52□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 54.3 ms