Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm15276-201ENSMUST00000145953 498 ntBASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Gm8176-201ENSMUST00000191297 1099 ntBASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Gm8385-201ENSMUST00000058999 643 ntBASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC19.21■□□□□ 0.67
Scn4aQ9ER60 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Gm4760-201ENSMUST00000119663 1030 ntBASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Gm12363-201ENSMUST00000122250 668 ntBASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Rn7sk-201ENSMUST00000083103 331 ntBASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Gm26315-201ENSMUST00000083890 321 ntBASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Gm24447-201ENSMUST00000083977 338 ntBASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn4aQ9ER60 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Gm14726-201ENSMUST00000120623 896 ntBASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Gm44262-201ENSMUST00000204969 372 ntBASIC19.19■□□□□ 0.66
Scn4aQ9ER60 AC131330.1-201ENSMUST00000227814 1015 ntBASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Elmo2-202ENSMUST00000074046 3502 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Gm18630-201ENSMUST00000222109 1397 ntBASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn4aQ9ER60 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Scn4aQ9ER60 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC19.18■□□□□ 0.66
Scn4aQ9ER60 Gm9555-201ENSMUST00000200908 583 ntBASIC19.18■□□□□ 0.66
Scn4aQ9ER60 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC19.18■□□□□ 0.66
Scn4aQ9ER60 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Scn4aQ9ER60 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Scn4aQ9ER60 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Scn4aQ9ER60 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Scn4aQ9ER60 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Scn4aQ9ER60 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC19.18■□□□□ 0.66
Scn4aQ9ER60 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Scn4aQ9ER60 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Scn4aQ9ER60 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Scn4aQ9ER60 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn4aQ9ER60 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC19.17■□□□□ 0.66
Scn4aQ9ER60 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn4aQ9ER60 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Scn4aQ9ER60 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Scn4aQ9ER60 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Scn4aQ9ER60 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Scn4aQ9ER60 1700061E18Rik-201ENSMUST00000154159 588 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Scn4aQ9ER60 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Scn4aQ9ER60 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Scn4aQ9ER60 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn4aQ9ER60 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn4aQ9ER60 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn4aQ9ER60 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC19.17■□□□□ 0.66
Scn4aQ9ER60 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn4aQ9ER60 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn4aQ9ER60 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn4aQ9ER60 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Scn4aQ9ER60 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn4aQ9ER60 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 68.2 ms