Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Gm13365-201ENSMUST00000121188 973 ntBASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Gm18889-201ENSMUST00000174284 929 ntBASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Ighv8-7-201ENSMUST00000194349 297 ntBASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 AC123645.1-201ENSMUST00000228469 605 ntBASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Ddx56Q9D0R4 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Gpr108-201ENSMUST00000005975 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Gm5648-201ENSMUST00000122244 1587 ntBASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 AC102291.3-201ENSMUST00000226566 405 ntBASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Ddx56Q9D0R4 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Gm24513-201ENSMUST00000174964 138 ntBASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 AC158529.1-201ENSMUST00000223618 239 ntBASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Gm42466-201ENSMUST00000202099 1301 ntBASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Gm4981-201ENSMUST00000099726 1854 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Ddx56Q9D0R4 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Gm27397-201ENSMUST00000184997 107 ntBASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Ddx56Q9D0R4 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 55 ms