Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Pcdh10-201ENSMUST00000166126 7081 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Heg1-205ENSMUST00000152782 8161 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 AC124732.2-201ENSMUST00000221977 316 ntBASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Lce1c-201ENSMUST00000047055 724 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Gm5049-201ENSMUST00000195878 1590 ntBASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Smc1aQ9CU62 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Mir449b-201ENSMUST00000104833 80 ntBASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Gm9385-201ENSMUST00000117563 472 ntBASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Gm8318-201ENSMUST00000182954 872 ntBASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 AC157650.3-201ENSMUST00000225058 1476 ntBASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Smc1aQ9CU62 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Gm16198-201ENSMUST00000118766 670 ntBASIC16.09■□□□□ 0.17
Smc1aQ9CU62 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Gm22175-201ENSMUST00000175007 78 ntBASIC16.09■□□□□ 0.17
Smc1aQ9CU62 Gm30437-201ENSMUST00000206086 1201 ntBASIC16.09■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 51.4 ms