Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Gm8597-201ENSMUST00000191525 1109 ntBASIC14.03□□□□□ -0.16
Msh4Q99MT2 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC14.03□□□□□ -0.16
Msh4Q99MT2 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msh4Q99MT2 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Gm8396-201ENSMUST00000057361 823 ntBASIC14.03□□□□□ -0.16
Msh4Q99MT2 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
Msh4Q99MT2 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC14.03□□□□□ -0.16
Msh4Q99MT2 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Msh4Q99MT2 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Msh4Q99MT2 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Msh4Q99MT2 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.16
Msh4Q99MT2 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Msh4Q99MT2 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Msh4Q99MT2 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Msh4Q99MT2 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Msh4Q99MT2 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Msh4Q99MT2 AC131743.5-201ENSMUST00000220775 1618 ntBASIC14.02□□□□□ -0.16
Msh4Q99MT2 Gm8096-201ENSMUST00000209921 1591 ntBASIC14.02□□□□□ -0.16
Msh4Q99MT2 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Gm34016-201ENSMUST00000222678 1384 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC14.02□□□□□ -0.17
Msh4Q99MT2 Gm12017-201ENSMUST00000122453 1003 ntBASIC14.02□□□□□ -0.17
Msh4Q99MT2 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Rian-216ENSMUST00000183215 880 ntTSL 3 BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Mir6990-201ENSMUST00000183724 91 ntBASIC14.02□□□□□ -0.17
Msh4Q99MT2 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Gm18057-201ENSMUST00000208220 503 ntBASIC14.02□□□□□ -0.17
Msh4Q99MT2 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Msh4Q99MT2 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msh4Q99MT2 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC14.01□□□□□ -0.17
Msh4Q99MT2 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC14.01□□□□□ -0.17
Msh4Q99MT2 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msh4Q99MT2 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms