Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Gm37912-201ENSMUST00000191895 3076 ntBASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Ushbp1Q8R370 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Gm14042-201ENSMUST00000120139 833 ntBASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Gm27437-201ENSMUST00000183429 107 ntBASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 AC131710.1-201ENSMUST00000228336 990 ntBASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Slc16a6-202ENSMUST00000070152 4219 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Ushbp1Q8R370 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Gm12151-201ENSMUST00000121374 290 ntBASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Nupl1-207ENSMUST00000225311 2475 ntBASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC16.14■□□□□ 0.17
Ushbp1Q8R370 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Gm25287-201ENSMUST00000103846 110 ntBASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Gm22918-201ENSMUST00000103855 110 ntBASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Gm15483-201ENSMUST00000120338 456 ntBASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Gm5479-201ENSMUST00000160578 435 ntBASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Gm5866-201ENSMUST00000177881 973 ntBASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Gm37277-201ENSMUST00000194052 1111 ntBASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Gm45098-201ENSMUST00000207179 657 ntBASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC16.13■□□□□ 0.17
Ushbp1Q8R370 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms