Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc40Q8BI79 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc40Q8BI79 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc40Q8BI79 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc40Q8BI79 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC15.05■□□□□ -0
Ccdc40Q8BI79 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc40Q8BI79 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
Ccdc40Q8BI79 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc40Q8BI79 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Ccdc40Q8BI79 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
Ccdc40Q8BI79 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Gm13464-201ENSMUST00000119418 935 ntBASIC15.04■□□□□ -0
Ccdc40Q8BI79 AC154572.2-201ENSMUST00000225105 997 ntBASIC15.04■□□□□ -0
Ccdc40Q8BI79 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC15.04■□□□□ -0
Ccdc40Q8BI79 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC15.04■□□□□ -0
Ccdc40Q8BI79 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Fasn-201ENSMUST00000055655 10050 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Gm9856-201ENSMUST00000217077 2578 ntBASIC15.03■□□□□ -0
Ccdc40Q8BI79 AC131586.3-201ENSMUST00000228355 1367 ntBASIC15.03■□□□□ -0
Ccdc40Q8BI79 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Gm8749-201ENSMUST00000117737 331 ntBASIC15.03■□□□□ -0
Ccdc40Q8BI79 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Gm7229-201ENSMUST00000214719 1007 ntBASIC15.03■□□□□ -0
Ccdc40Q8BI79 AC159295.1-201ENSMUST00000225326 940 ntBASIC15.03■□□□□ -0
Ccdc40Q8BI79 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Ccdc40Q8BI79 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Ccdc40Q8BI79 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Ccdc40Q8BI79 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Ccdc40Q8BI79 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Ccdc40Q8BI79 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Ccdc40Q8BI79 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Ccdc40Q8BI79 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Ccdc40Q8BI79 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Ccdc40Q8BI79 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Ccdc40Q8BI79 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Ccdc40Q8BI79 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Ccdc40Q8BI79 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC15.02■□□□□ -0
Ccdc40Q8BI79 Gm27301-201ENSMUST00000184012 127 ntBASIC15.02■□□□□ -0
Ccdc40Q8BI79 Mir8117-201ENSMUST00000184773 107 ntBASIC15.02■□□□□ -0
Ccdc40Q8BI79 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Ccdc40Q8BI79 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Ccdc40Q8BI79 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Ccdc40Q8BI79 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Ccdc40Q8BI79 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Ccdc40Q8BI79 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Ccdc40Q8BI79 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC15.02□□□□□ -0.01
Ccdc40Q8BI79 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC15.02□□□□□ -0.01
Ccdc40Q8BI79 Per1-201ENSMUST00000021271 4671 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Ccdc40Q8BI79 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Ccdc40Q8BI79 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
Ccdc40Q8BI79 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC15.02□□□□□ -0.01
Ccdc40Q8BI79 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Ccdc40Q8BI79 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Ccdc40Q8BI79 Gm13410-201ENSMUST00000117058 1415 ntBASIC15.01□□□□□ -0.01
Ccdc40Q8BI79 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC15.01□□□□□ -0.01
Ccdc40Q8BI79 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Ccdc40Q8BI79 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Ccdc40Q8BI79 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC15.01□□□□□ -0.01
Ccdc40Q8BI79 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms