Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC16.97■□□□□ 0.31
Limch1Q3UH68 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Limch1Q3UH68 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC16.97■□□□□ 0.31
Limch1Q3UH68 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC16.97■□□□□ 0.31
Limch1Q3UH68 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Limch1Q3UH68 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC16.97■□□□□ 0.31
Limch1Q3UH68 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Limch1Q3UH68 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
Limch1Q3UH68 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Limch1Q3UH68 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Limch1Q3UH68 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Limch1Q3UH68 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Limch1Q3UH68 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Limch1Q3UH68 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Limch1Q3UH68 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Limch1Q3UH68 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Egr1-201ENSMUST00000064795 4484 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Gm12017-201ENSMUST00000122453 1003 ntBASIC16.96■□□□□ 0.31
Limch1Q3UH68 Gm27430-201ENSMUST00000184585 107 ntBASIC16.96■□□□□ 0.31
Limch1Q3UH68 Gm44333-201ENSMUST00000197168 107 ntBASIC16.96■□□□□ 0.31
Limch1Q3UH68 Wdyhv1-206ENSMUST00000227142 786 ntBASIC16.96■□□□□ 0.31
Limch1Q3UH68 AC155729.1-201ENSMUST00000227758 544 ntBASIC16.96■□□□□ 0.31
Limch1Q3UH68 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Limch1Q3UH68 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Limch1Q3UH68 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC16.96■□□□□ 0.3
Limch1Q3UH68 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
Limch1Q3UH68 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC16.96■□□□□ 0.3
Limch1Q3UH68 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Limch1Q3UH68 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Limch1Q3UH68 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Limch1Q3UH68 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
Limch1Q3UH68 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Limch1Q3UH68 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC16.95■□□□□ 0.3
Limch1Q3UH68 Gm24158-201ENSMUST00000175263 71 ntBASIC16.95■□□□□ 0.3
Limch1Q3UH68 Gm5186-201ENSMUST00000218781 920 ntBASIC16.95■□□□□ 0.3
Limch1Q3UH68 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Limch1Q3UH68 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Limch1Q3UH68 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Limch1Q3UH68 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Limch1Q3UH68 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Limch1Q3UH68 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Limch1Q3UH68 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Limch1Q3UH68 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Limch1Q3UH68 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Gm25287-201ENSMUST00000103846 110 ntBASIC16.94■□□□□ 0.3
Limch1Q3UH68 Gm22918-201ENSMUST00000103855 110 ntBASIC16.94■□□□□ 0.3
Limch1Q3UH68 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC16.94■□□□□ 0.3
Limch1Q3UH68 CT030684.1-201ENSMUST00000227292 914 ntBASIC16.94■□□□□ 0.3
Limch1Q3UH68 AC131710.1-201ENSMUST00000228336 990 ntBASIC16.94■□□□□ 0.3
Limch1Q3UH68 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Limch1Q3UH68 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Limch1Q3UH68 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Limch1Q3UH68 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms