Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC14.07□□□□□ -0.16
Col9a1Q05722 Gm12208-201ENSMUST00000122004 163 ntBASIC14.07□□□□□ -0.16
Col9a1Q05722 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC14.07□□□□□ -0.16
Col9a1Q05722 Lage3-201ENSMUST00000015433 761 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col9a1Q05722 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col9a1Q05722 Gm10275-202ENSMUST00000168697 495 ntBASIC14.07□□□□□ -0.16
Col9a1Q05722 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Col9a1Q05722 AC069562.2-201ENSMUST00000224644 2146 ntBASIC14.07□□□□□ -0.16
Col9a1Q05722 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col9a1Q05722 Gm10275-201ENSMUST00000092620 635 ntBASIC14.07□□□□□ -0.16
Col9a1Q05722 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC14.07□□□□□ -0.16
Col9a1Q05722 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC14.07□□□□□ -0.16
Col9a1Q05722 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col9a1Q05722 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Col9a1Q05722 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col9a1Q05722 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col9a1Q05722 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Col9a1Q05722 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC14.07□□□□□ -0.16
Col9a1Q05722 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Col9a1Q05722 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Col9a1Q05722 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC14.06□□□□□ -0.16
Col9a1Q05722 Gm15370-201ENSMUST00000117158 253 ntBASIC14.06□□□□□ -0.16
Col9a1Q05722 Gm14028-201ENSMUST00000117434 479 ntBASIC14.06□□□□□ -0.16
Col9a1Q05722 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC14.06□□□□□ -0.16
Col9a1Q05722 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC14.06□□□□□ -0.16
Col9a1Q05722 Mir6927-201ENSMUST00000184494 71 ntBASIC14.06□□□□□ -0.16
Col9a1Q05722 Gm37073-201ENSMUST00000192469 1222 ntBASIC14.06□□□□□ -0.16
Col9a1Q05722 Gm5850-201ENSMUST00000192923 1206 ntBASIC14.06□□□□□ -0.16
Col9a1Q05722 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC14.06□□□□□ -0.16
Col9a1Q05722 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC14.06□□□□□ -0.16
Col9a1Q05722 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Col9a1Q05722 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Col9a1Q05722 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC14.06□□□□□ -0.16
Col9a1Q05722 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Col9a1Q05722 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Col9a1Q05722 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Gm12217-201ENSMUST00000118858 696 ntBASIC14.05□□□□□ -0.16
Col9a1Q05722 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Gm12395-201ENSMUST00000144765 536 ntTSL 5 BASIC14.05□□□□□ -0.16
Col9a1Q05722 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC14.05□□□□□ -0.16
Col9a1Q05722 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Gm44100-201ENSMUST00000204329 436 ntBASIC14.05□□□□□ -0.16
Col9a1Q05722 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Gm8227-201ENSMUST00000223306 571 ntBASIC14.05□□□□□ -0.16
Col9a1Q05722 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Il6-201ENSMUST00000026845 1141 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 AC121598.2-201ENSMUST00000228376 2325 ntBASIC14.05□□□□□ -0.16
Col9a1Q05722 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Gm5620-201ENSMUST00000077991 1348 ntBASIC14.05□□□□□ -0.16
Col9a1Q05722 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 2810454H06Rik-201ENSMUST00000189942 3148 ntBASIC14.05□□□□□ -0.16
Col9a1Q05722 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col9a1Q05722 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col9a1Q05722 Gm43072-201ENSMUST00000200283 1671 ntBASIC14.04□□□□□ -0.16
Col9a1Q05722 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col9a1Q05722 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col9a1Q05722 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col9a1Q05722 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col9a1Q05722 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col9a1Q05722 Gm5133-201ENSMUST00000118940 1255 ntBASIC14.04□□□□□ -0.16
Col9a1Q05722 Thegl-203ENSMUST00000118941 746 ntTSL 3 BASIC14.04□□□□□ -0.16
Col9a1Q05722 Gm11340-201ENSMUST00000119226 412 ntBASIC14.04□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 47.5 ms