Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdx1P18111 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdx1P18111 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdx1P18111 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC11.66□□□□□ -0.54
Cdx1P18111 Gm44414-201ENSMUST00000203660 2109 ntBASIC11.66□□□□□ -0.54
Cdx1P18111 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC11.66□□□□□ -0.54
Cdx1P18111 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Cdx1P18111 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdx1P18111 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Cdx1P18111 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC11.66□□□□□ -0.54
Cdx1P18111 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdx1P18111 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Cdx1P18111 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Cdx1P18111 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
Cdx1P18111 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Cdx1P18111 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC11.65□□□□□ -0.54
Cdx1P18111 Gm2895-201ENSMUST00000171591 3194 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC11.65□□□□□ -0.54
Cdx1P18111 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC11.65□□□□□ -0.54
Cdx1P18111 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 Gm9279-201ENSMUST00000223175 1606 ntBASIC11.65□□□□□ -0.54
Cdx1P18111 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
Cdx1P18111 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.54
Cdx1P18111 Mir5126-201ENSMUST00000175513 77 ntBASIC11.65□□□□□ -0.54
Cdx1P18111 Gm4535-201ENSMUST00000182274 558 ntBASIC11.65□□□□□ -0.54
Cdx1P18111 Gm8000-201ENSMUST00000188378 592 ntBASIC11.65□□□□□ -0.54
Cdx1P18111 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC11.65□□□□□ -0.54
Cdx1P18111 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
Cdx1P18111 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC11.65□□□□□ -0.54
Cdx1P18111 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC11.65□□□□□ -0.54
Cdx1P18111 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC11.65□□□□□ -0.54
Cdx1P18111 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 CT009713.7-201ENSMUST00000224689 571 ntBASIC11.65□□□□□ -0.54
Cdx1P18111 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC11.65□□□□□ -0.54
Cdx1P18111 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
Cdx1P18111 Gm10355-201ENSMUST00000097146 517 ntBASIC11.65□□□□□ -0.54
Cdx1P18111 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Cdx1P18111 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
Cdx1P18111 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
Cdx1P18111 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Cdx1P18111 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.55
Cdx1P18111 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.55
Cdx1P18111 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.55
Cdx1P18111 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Cdx1P18111 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
Cdx1P18111 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.55
Cdx1P18111 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC11.64□□□□□ -0.55
Cdx1P18111 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC11.64□□□□□ -0.55
Cdx1P18111 Itpripl1-203ENSMUST00000154021 1753 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC11.64□□□□□ -0.55
Cdx1P18111 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
Cdx1P18111 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Mras-202ENSMUST00000119472 1190 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC11.64□□□□□ -0.55
Cdx1P18111 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC11.64□□□□□ -0.55
Cdx1P18111 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC11.64□□□□□ -0.55
Cdx1P18111 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
Cdx1P18111 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Gm10728-201ENSMUST00000194292 1829 ntBASIC11.64□□□□□ -0.55
Cdx1P18111 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Cdx1P18111 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms