Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 Gm38094-201ENSMUST00000195864 2978 ntBASIC13.68□□□□□ -0.22
Lire1P11260 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC13.68□□□□□ -0.22
Lire1P11260 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Lire1P11260 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Lire1P11260 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Lire1P11260 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC13.67□□□□□ -0.22
Lire1P11260 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC13.67□□□□□ -0.22
Lire1P11260 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC13.67□□□□□ -0.22
Lire1P11260 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC13.67□□□□□ -0.22
Lire1P11260 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC13.67□□□□□ -0.22
Lire1P11260 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC13.67□□□□□ -0.22
Lire1P11260 Gm45167-201ENSMUST00000208007 322 ntBASIC13.67□□□□□ -0.22
Lire1P11260 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC13.67□□□□□ -0.22
Lire1P11260 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Lire1P11260 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 AC123738.2-201ENSMUST00000223791 1899 ntBASIC13.67□□□□□ -0.22
Lire1P11260 Rabl2-201ENSMUST00000023294 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Lire1P11260 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Lire1P11260 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Lire1P11260 Gm29724-201ENSMUST00000214688 3062 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Lire1P11260 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
Lire1P11260 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC13.66□□□□□ -0.22
Lire1P11260 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Lire1P11260 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Gm37861-201ENSMUST00000193534 2869 ntBASIC13.66□□□□□ -0.22
Lire1P11260 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Gm9856-201ENSMUST00000217077 2578 ntBASIC13.66□□□□□ -0.22
Lire1P11260 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Lire1P11260 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC13.66□□□□□ -0.22
Lire1P11260 Commd5-202ENSMUST00000109793 920 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Lire1P11260 Gm18489-201ENSMUST00000172565 551 ntBASIC13.66□□□□□ -0.22
Lire1P11260 Gm27300-201ENSMUST00000184085 97 ntBASIC13.66□□□□□ -0.22
Lire1P11260 Gm27335-201ENSMUST00000184758 97 ntBASIC13.66□□□□□ -0.22
Lire1P11260 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC13.66□□□□□ -0.22
Lire1P11260 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC13.66□□□□□ -0.22
Lire1P11260 Gm37171-201ENSMUST00000192636 1185 ntBASIC13.66□□□□□ -0.22
Lire1P11260 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC13.66□□□□□ -0.22
Lire1P11260 AC093926.2-201ENSMUST00000214468 1228 ntBASIC13.66□□□□□ -0.22
Lire1P11260 CR974585.1-201ENSMUST00000221790 1263 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC13.66□□□□□ -0.22
Lire1P11260 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Lire1P11260 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 AC148324.1-201ENSMUST00000219034 4240 ntBASIC13.66□□□□□ -0.22
Lire1P11260 Gm10728-201ENSMUST00000194292 1829 ntBASIC13.66□□□□□ -0.22
Lire1P11260 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Cblb-204ENSMUST00000227062 3728 ntAPPRIS P2 BASIC13.66□□□□□ -0.22
Lire1P11260 Lmo7-201ENSMUST00000100337 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Mecom-206ENSMUST00000172694 4381 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Cdkn1b-203ENSMUST00000204807 1757 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Lire1P11260 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Lire1P11260 Abcd1-201ENSMUST00000002084 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lire1P11260 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Lire1P11260 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Lire1P11260 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC13.65□□□□□ -0.22
Lire1P11260 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms