Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC16.65■□□□□ 0.26
Col1a1P11087 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC16.65■□□□□ 0.26
Col1a1P11087 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC16.65■□□□□ 0.26
Col1a1P11087 Gm8801-201ENSMUST00000173255 1064 ntBASIC16.65■□□□□ 0.26
Col1a1P11087 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Gm38671-201ENSMUST00000200573 130 ntBASIC16.65■□□□□ 0.26
Col1a1P11087 Gm18054-201ENSMUST00000207539 555 ntBASIC16.65■□□□□ 0.26
Col1a1P11087 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC16.65■□□□□ 0.26
Col1a1P11087 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC16.65■□□□□ 0.26
Col1a1P11087 Gm8598-201ENSMUST00000221184 836 ntBASIC16.65■□□□□ 0.26
Col1a1P11087 Gm7399-201ENSMUST00000032395 858 ntBASIC16.65■□□□□ 0.26
Col1a1P11087 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Col1a1P11087 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
Col1a1P11087 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 AC114543.1-201ENSMUST00000226451 1558 ntBASIC16.65■□□□□ 0.26
Col1a1P11087 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col1a1P11087 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Col1a1P11087 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC16.64■□□□□ 0.26
Col1a1P11087 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col1a1P11087 Gm42632-201ENSMUST00000201707 2411 ntBASIC16.64■□□□□ 0.25
Col1a1P11087 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col1a1P11087 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col1a1P11087 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col1a1P11087 Carlr-201ENSMUST00000181515 2574 ntBASIC16.64■□□□□ 0.25
Col1a1P11087 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col1a1P11087 Gm5187-201ENSMUST00000117317 991 ntBASIC16.64■□□□□ 0.25
Col1a1P11087 Gm12384-201ENSMUST00000119228 919 ntBASIC16.64■□□□□ 0.25
Col1a1P11087 Gm11803-201ENSMUST00000119966 444 ntBASIC16.64■□□□□ 0.25
Col1a1P11087 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
Col1a1P11087 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC16.64■□□□□ 0.25
Col1a1P11087 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC16.64■□□□□ 0.25
Col1a1P11087 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col1a1P11087 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col1a1P11087 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col1a1P11087 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col1a1P11087 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC16.64■□□□□ 0.25
Col1a1P11087 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Col1a1P11087 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Col1a1P11087 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col1a1P11087 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col1a1P11087 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC16.64■□□□□ 0.25
Col1a1P11087 Dctn4-202ENSMUST00000223590 1530 ntBASIC16.64■□□□□ 0.25
Col1a1P11087 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col1a1P11087 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col1a1P11087 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC16.63■□□□□ 0.25
Col1a1P11087 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC16.63■□□□□ 0.25
Col1a1P11087 Gm40466-201ENSMUST00000212174 422 ntBASIC16.63■□□□□ 0.25
Col1a1P11087 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC16.63■□□□□ 0.25
Col1a1P11087 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Dhrs3-207ENSMUST00000171001 1349 ntTSL 5 BASIC16.63■□□□□ 0.25
Col1a1P11087 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col1a1P11087 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC16.63■□□□□ 0.25
Col1a1P11087 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 Gm11557-201ENSMUST00000120200 1008 ntBASIC16.62■□□□□ 0.25
Col1a1P11087 Hspb9-201ENSMUST00000017976 652 ntAPPRIS ALT2 BASIC16.62■□□□□ 0.25
Col1a1P11087 Gm8927-201ENSMUST00000181978 981 ntBASIC16.62■□□□□ 0.25
Col1a1P11087 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC16.62■□□□□ 0.25
Col1a1P11087 Gm38223-201ENSMUST00000194484 695 ntBASIC16.62■□□□□ 0.25
Col1a1P11087 Gm6013-201ENSMUST00000212264 699 ntBASIC16.62■□□□□ 0.25
Col1a1P11087 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 AC166997.1-201ENSMUST00000225122 572 ntBASIC16.62■□□□□ 0.25
Col1a1P11087 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Col1a1P11087 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col1a1P11087 Gm3222-201ENSMUST00000071282 990 ntBASIC16.62■□□□□ 0.25
Col1a1P11087 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms