Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC11.24□□□□□ -0.61
Hoxd3P09027 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Hoxd3P09027 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
Hoxd3P09027 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Gm16425-201ENSMUST00000118143 3130 ntBASIC11.24□□□□□ -0.61
Hoxd3P09027 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Gm13780-201ENSMUST00000150482 1187 ntTSL 5 BASIC11.24□□□□□ -0.61
Hoxd3P09027 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Gm25144-201ENSMUST00000179561 110 ntBASIC11.24□□□□□ -0.61
Hoxd3P09027 Gm25352-201ENSMUST00000179815 110 ntBASIC11.24□□□□□ -0.61
Hoxd3P09027 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Gm37277-201ENSMUST00000194052 1111 ntBASIC11.24□□□□□ -0.61
Hoxd3P09027 Gm20949-201ENSMUST00000206478 952 ntBASIC11.24□□□□□ -0.61
Hoxd3P09027 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC11.24□□□□□ -0.61
Hoxd3P09027 AC132446.1-201ENSMUST00000222655 226 ntBASIC11.24□□□□□ -0.61
Hoxd3P09027 Hesx1-201ENSMUST00000035433 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Hoxd3P09027 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
Hoxd3P09027 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC11.24□□□□□ -0.61
Hoxd3P09027 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Hoxd3P09027 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Hoxd3P09027 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC11.24□□□□□ -0.61
Hoxd3P09027 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC11.23□□□□□ -0.61
Hoxd3P09027 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC11.23□□□□□ -0.61
Hoxd3P09027 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC11.23□□□□□ -0.61
Hoxd3P09027 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC11.23□□□□□ -0.61
Hoxd3P09027 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Gm27618-201ENSMUST00000183671 60 ntBASIC11.23□□□□□ -0.61
Hoxd3P09027 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Hoxd3P09027 Gm40645-202ENSMUST00000219828 874 ntTSL 5 BASIC11.23□□□□□ -0.61
Hoxd3P09027 AC155266.1-201ENSMUST00000220762 904 ntBASIC11.23□□□□□ -0.61
Hoxd3P09027 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Hoxd3P09027 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
Hoxd3P09027 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
Hoxd3P09027 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC11.23□□□□□ -0.61
Hoxd3P09027 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Hoxd3P09027 Gm14780-201ENSMUST00000118387 2737 ntBASIC11.22□□□□□ -0.61
Hoxd3P09027 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC11.22□□□□□ -0.61
Hoxd3P09027 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC11.22□□□□□ -0.61
Hoxd3P09027 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
Hoxd3P09027 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hoxd3P09027 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Hoxd3P09027 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
Hoxd3P09027 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hoxd3P09027 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hoxd3P09027 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Hoxd3P09027 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC11.22□□□□□ -0.61
Hoxd3P09027 Gm13823-201ENSMUST00000119930 345 ntBASIC11.22□□□□□ -0.61
Hoxd3P09027 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Hoxd3P09027 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Hoxd3P09027 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC11.22□□□□□ -0.61
Hoxd3P09027 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Hoxd3P09027 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Hoxd3P09027 2900076G11Rik-201ENSMUST00000202297 631 ntBASIC11.22□□□□□ -0.61
Hoxd3P09027 Olfr286-202ENSMUST00000205305 969 ntBASIC11.22□□□□□ -0.61
Hoxd3P09027 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hoxd3P09027 CT010431.1-201ENSMUST00000221249 1080 ntBASIC11.22□□□□□ -0.61
Hoxd3P09027 AC174678.1-201ENSMUST00000228007 2749 ntBASIC11.22□□□□□ -0.61
Hoxd3P09027 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC11.22□□□□□ -0.61
Hoxd3P09027 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Hoxd3P09027 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Hoxd3P09027 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms