Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
Col5a1O88207 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC12.8□□□□□ -0.36
Col5a1O88207 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Gm5370-201ENSMUST00000187187 574 ntBASIC12.8□□□□□ -0.36
Col5a1O88207 Gm29127-201ENSMUST00000188304 517 ntBASIC12.8□□□□□ -0.36
Col5a1O88207 Gm4857-201ENSMUST00000192718 785 ntBASIC12.8□□□□□ -0.36
Col5a1O88207 Gm9299-201ENSMUST00000206392 1140 ntBASIC12.8□□□□□ -0.36
Col5a1O88207 CU024892.2-201ENSMUST00000224608 832 ntBASIC12.8□□□□□ -0.36
Col5a1O88207 AC125117.1-201ENSMUST00000228121 468 ntBASIC12.8□□□□□ -0.36
Col5a1O88207 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Gm45212-201ENSMUST00000205831 3403 ntBASIC12.8□□□□□ -0.36
Col5a1O88207 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Gm45504-201ENSMUST00000211407 2107 ntBASIC12.8□□□□□ -0.36
Col5a1O88207 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC12.8□□□□□ -0.36
Col5a1O88207 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Col5a1O88207 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Cdx4-201ENSMUST00000033689 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Col5a1O88207 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Col5a1O88207 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 AC162938.1-201ENSMUST00000213140 2323 ntBASIC12.79□□□□□ -0.36
Col5a1O88207 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
Col5a1O88207 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Gm20036-201ENSMUST00000177547 844 ntTSL 3 BASIC12.79□□□□□ -0.36
Col5a1O88207 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC12.79□□□□□ -0.36
Col5a1O88207 AC139350.3-201ENSMUST00000226151 420 ntBASIC12.79□□□□□ -0.36
Col5a1O88207 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC12.79□□□□□ -0.36
Col5a1O88207 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Col5a1O88207 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Col5a1O88207 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC12.79□□□□□ -0.36
Col5a1O88207 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC12.79□□□□□ -0.36
Col5a1O88207 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Gm43509-201ENSMUST00000196551 2594 ntBASIC12.79□□□□□ -0.36
Col5a1O88207 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Col5a1O88207 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC12.79□□□□□ -0.36
Col5a1O88207 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Dctn4-202ENSMUST00000223590 1530 ntBASIC12.79□□□□□ -0.36
Col5a1O88207 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Col5a1O88207 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Col5a1O88207 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col5a1O88207 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
Col5a1O88207 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC12.78□□□□□ -0.36
Col5a1O88207 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Col5a1O88207 Gm37714-201ENSMUST00000194742 342 ntBASIC12.78□□□□□ -0.36
Col5a1O88207 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC12.78□□□□□ -0.36
Col5a1O88207 Gm7561-201ENSMUST00000211203 886 ntBASIC12.78□□□□□ -0.36
Col5a1O88207 AC155258.1-201ENSMUST00000219303 253 ntBASIC12.78□□□□□ -0.36
Col5a1O88207 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col5a1O88207 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC12.78□□□□□ -0.36
Col5a1O88207 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col5a1O88207 AC166574.6-201ENSMUST00000227889 1806 ntBASIC12.78□□□□□ -0.36
Col5a1O88207 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col5a1O88207 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Col5a1O88207 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col5a1O88207 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col5a1O88207 AL645783.1-201ENSMUST00000221416 1832 ntBASIC12.78□□□□□ -0.36
Col5a1O88207 Gm5187-201ENSMUST00000117317 991 ntBASIC12.78□□□□□ -0.36
Col5a1O88207 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Col5a1O88207 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC12.78□□□□□ -0.36
Col5a1O88207 Gm26083-201ENSMUST00000157904 193 ntBASIC12.78□□□□□ -0.36
Col5a1O88207 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col5a1O88207 Gm8801-201ENSMUST00000173255 1064 ntBASIC12.78□□□□□ -0.36
Col5a1O88207 Gm24196-201ENSMUST00000179161 110 ntBASIC12.78□□□□□ -0.36
Col5a1O88207 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col5a1O88207 Gm43118-201ENSMUST00000199149 775 ntBASIC12.78□□□□□ -0.36
Col5a1O88207 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC12.78□□□□□ -0.36
Col5a1O88207 AC154276.1-201ENSMUST00000228874 1299 ntBASIC12.78□□□□□ -0.36
Col5a1O88207 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Col5a1O88207 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Col5a1O88207 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
Col5a1O88207 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 56.4 ms