Protein–RNA interactions for Protein: O54941

Smarce1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1, mousemouse

Known RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarce1O54941 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Gm44291-201ENSMUST00000203102 2865 ntBASIC17.12■□□□□ 0.33
Smarce1O54941 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC17.12■□□□□ 0.33
Smarce1O54941 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC17.12■□□□□ 0.33
Smarce1O54941 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC17.12■□□□□ 0.33
Smarce1O54941 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC17.12■□□□□ 0.33
Smarce1O54941 AC154527.4-201ENSMUST00000224364 1667 ntBASIC17.12■□□□□ 0.33
Smarce1O54941 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Smarce1O54941 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Smarce1O54941 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Smarce1O54941 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smarce1O54941 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smarce1O54941 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smarce1O54941 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smarce1O54941 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Smarce1O54941 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smarce1O54941 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Smarce1O54941 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Smarce1O54941 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
Smarce1O54941 Gm37230-201ENSMUST00000194491 818 ntBASIC17.11■□□□□ 0.33
Smarce1O54941 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC17.11■□□□□ 0.33
Smarce1O54941 Gm45747-201ENSMUST00000212203 999 ntBASIC17.11■□□□□ 0.33
Smarce1O54941 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smarce1O54941 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smarce1O54941 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smarce1O54941 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smarce1O54941 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smarce1O54941 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Smarce1O54941 Fbxo3-201ENSMUST00000028603 4740 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Smarce1O54941 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Endou-202ENSMUST00000100249 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Smarce1O54941 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC17.1■□□□□ 0.33
Smarce1O54941 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Smarce1O54941 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC17.1■□□□□ 0.33
Smarce1O54941 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Smarce1O54941 Tmem38b-201ENSMUST00000030127 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC17.1■□□□□ 0.33
Smarce1O54941 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC17.1■□□□□ 0.33
Smarce1O54941 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Smarce1O54941 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC17.1■□□□□ 0.33
Smarce1O54941 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC17.1■□□□□ 0.33
Smarce1O54941 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Smarce1O54941 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Smarce1O54941 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Smarce1O54941 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Smarce1O54941 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Smarce1O54941 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
Smarce1O54941 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Smarce1O54941 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Smarce1O54941 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smarce1O54941 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Smarce1O54941 Gm26513-201ENSMUST00000181802 2489 ntBASIC17.09■□□□□ 0.33
Smarce1O54941 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms