Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Mtmr3-201ENSMUST00000040448 5534 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Hmgb3O54879 Gm43364-201ENSMUST00000196046 3274 ntBASIC11.93□□□□□ -0.5
Hmgb3O54879 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
Hmgb3O54879 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Gm44454-201ENSMUST00000198541 138 ntBASIC11.93□□□□□ -0.5
Hmgb3O54879 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Gm10313-201ENSMUST00000095320 1002 ntBASIC11.93□□□□□ -0.5
Hmgb3O54879 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Hmgb3O54879 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Hmgb3O54879 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Hmgb3O54879 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC11.93□□□□□ -0.5
Hmgb3O54879 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC11.93□□□□□ -0.5
Hmgb3O54879 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Hmgb3O54879 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Bach1-201ENSMUST00000026703 5867 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Hmgb3O54879 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Mrvi1-202ENSMUST00000125758 5953 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
Hmgb3O54879 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Hmgb3O54879 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC11.92□□□□□ -0.5
Hmgb3O54879 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Hmgb3O54879 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC11.92□□□□□ -0.5
Hmgb3O54879 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Gm5587-201ENSMUST00000206270 674 ntBASIC11.92□□□□□ -0.5
Hmgb3O54879 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC11.92□□□□□ -0.5
Hmgb3O54879 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC11.92□□□□□ -0.5
Hmgb3O54879 Gm45328-201ENSMUST00000210942 917 ntBASIC11.92□□□□□ -0.5
Hmgb3O54879 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC11.92□□□□□ -0.5
Hmgb3O54879 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC11.92□□□□□ -0.5
Hmgb3O54879 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Hmgb3O54879 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Hmgb3O54879 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hmgb3O54879 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC11.91□□□□□ -0.5
Hmgb3O54879 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Hmgb3O54879 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hmgb3O54879 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Hmgb3O54879 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hmgb3O54879 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC11.91□□□□□ -0.5
Hmgb3O54879 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hmgb3O54879 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hmgb3O54879 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hmgb3O54879 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC11.91□□□□□ -0.5
Hmgb3O54879 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hmgb3O54879 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hmgb3O54879 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hmgb3O54879 Gm10499-201ENSMUST00000174094 934 ntBASIC11.91□□□□□ -0.5
Hmgb3O54879 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC11.91□□□□□ -0.5
Hmgb3O54879 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC11.91□□□□□ -0.5
Hmgb3O54879 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Hmgb3O54879 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Hmgb3O54879 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 76.3 ms