Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Chd3B1AR17 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Chd3B1AR17 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Chd3B1AR17 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
Chd3B1AR17 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC14.08□□□□□ -0.15
Chd3B1AR17 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
Chd3B1AR17 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC14.08□□□□□ -0.15
Chd3B1AR17 Gm6912-201ENSMUST00000117218 544 ntBASIC14.08□□□□□ -0.15
Chd3B1AR17 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Chd3B1AR17 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Chd3B1AR17 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Chd3B1AR17 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Chd3B1AR17 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
Chd3B1AR17 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
Chd3B1AR17 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Chd3B1AR17 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Chd3B1AR17 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Chd3B1AR17 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Chd3B1AR17 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Chd3B1AR17 Gm12490-201ENSMUST00000120255 560 ntBASIC14.08□□□□□ -0.16
Chd3B1AR17 Gm27437-201ENSMUST00000183429 107 ntBASIC14.08□□□□□ -0.16
Chd3B1AR17 Gm6473-201ENSMUST00000188572 1210 ntBASIC14.08□□□□□ -0.16
Chd3B1AR17 Isca2-201ENSMUST00000021667 883 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Chd3B1AR17 AC121804.3-201ENSMUST00000223420 295 ntBASIC14.08□□□□□ -0.16
Chd3B1AR17 AC102291.3-201ENSMUST00000226566 405 ntBASIC14.08□□□□□ -0.16
Chd3B1AR17 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Chd3B1AR17 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Chd3B1AR17 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
Chd3B1AR17 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Chd3B1AR17 Gm3365-201ENSMUST00000216296 1480 ntBASIC14.08□□□□□ -0.16
Chd3B1AR17 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC14.08□□□□□ -0.16
Chd3B1AR17 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
Chd3B1AR17 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Gm43697-201ENSMUST00000199637 2581 ntBASIC14.07□□□□□ -0.16
Chd3B1AR17 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Chd3B1AR17 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC14.07□□□□□ -0.16
Chd3B1AR17 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Chd3B1AR17 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC14.07□□□□□ -0.16
Chd3B1AR17 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC14.07□□□□□ -0.16
Chd3B1AR17 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC14.07□□□□□ -0.16
Chd3B1AR17 Gm18027-201ENSMUST00000218947 619 ntBASIC14.07□□□□□ -0.16
Chd3B1AR17 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Chd3B1AR17 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Cbfa2t3-201ENSMUST00000006525 3161 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
Chd3B1AR17 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
Chd3B1AR17 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Chd3B1AR17 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC14.06□□□□□ -0.16
Chd3B1AR17 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC14.06□□□□□ -0.16
Chd3B1AR17 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC14.06□□□□□ -0.16
Chd3B1AR17 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Chd3B1AR17 Ssr1-204ENSMUST00000225319 1610 ntBASIC14.06□□□□□ -0.16
Chd3B1AR17 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Chd3B1AR17 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 AC121801.1-201ENSMUST00000225363 1899 ntBASIC14.06□□□□□ -0.16
Chd3B1AR17 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Gm16215-201ENSMUST00000161990 637 ntBASIC14.06□□□□□ -0.16
Chd3B1AR17 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC14.06□□□□□ -0.16
Chd3B1AR17 AC135669.1-201ENSMUST00000213585 412 ntBASIC14.06□□□□□ -0.16
Chd3B1AR17 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Chd3B1AR17 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Chd3B1AR17 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms