Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Gm9856-201ENSMUST00000217077 2578 ntBASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Rpph1-201ENSMUST00000175096 319 ntBASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Chchd1-203ENSMUST00000224633 557 ntBASIC13.59□□□□□ -0.23
Trim3Q9R1R2 AC124549.3-201ENSMUST00000225541 367 ntBASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Trim3Q9R1R2 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC13.58□□□□□ -0.23
Trim3Q9R1R2 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Trim3Q9R1R2 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Trim3Q9R1R2 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Trim3Q9R1R2 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC13.58□□□□□ -0.23
Trim3Q9R1R2 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Trim3Q9R1R2 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Trim3Q9R1R2 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Gm11025-201ENSMUST00000140773 466 ntBASIC13.58□□□□□ -0.24
Trim3Q9R1R2 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Gm27494-201ENSMUST00000184735 189 ntBASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Gm20553-201ENSMUST00000204205 844 ntBASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Trim3Q9R1R2 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Mir1895-201ENSMUST00000122615 79 ntBASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 AC155252.2-201ENSMUST00000226946 680 ntBASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Nrn1-204ENSMUST00000224323 1779 ntBASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Midn-201ENSMUST00000042057 3727 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
Trim3Q9R1R2 CT030684.3-201ENSMUST00000227308 2445 ntBASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Trim3Q9R1R2 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms