Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Gm11788-201ENSMUST00000142520 562 ntTSL 3 BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Gm27321-201ENSMUST00000185021 205 ntBASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Gm20553-201ENSMUST00000204205 844 ntBASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Smc1aQ9CU62 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.18
Smc1aQ9CU62 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Smc1aQ9CU62 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC16.14■□□□□ 0.17
Smc1aQ9CU62 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC16.14■□□□□ 0.17
Smc1aQ9CU62 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Smc1aQ9CU62 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Smc1aQ9CU62 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
Smc1aQ9CU62 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Smc1aQ9CU62 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Smc1aQ9CU62 Rpph1-201ENSMUST00000175096 319 ntBASIC16.14■□□□□ 0.17
Smc1aQ9CU62 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC16.14■□□□□ 0.17
Smc1aQ9CU62 Gm20949-201ENSMUST00000206478 952 ntBASIC16.14■□□□□ 0.17
Smc1aQ9CU62 AC131187.1-201ENSMUST00000224567 809 ntBASIC16.14■□□□□ 0.17
Smc1aQ9CU62 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Smc1aQ9CU62 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Smc1aQ9CU62 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Smc1aQ9CU62 AC162938.1-201ENSMUST00000213140 2323 ntBASIC16.14■□□□□ 0.17
Smc1aQ9CU62 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Smc1aQ9CU62 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
Smc1aQ9CU62 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Smc1aQ9CU62 Gm5184-201ENSMUST00000220417 1702 ntBASIC16.14■□□□□ 0.17
Smc1aQ9CU62 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Smc1aQ9CU62 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 AC126250.1-201ENSMUST00000228343 1768 ntBASIC16.13■□□□□ 0.17
Smc1aQ9CU62 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 AC148324.1-201ENSMUST00000219034 4240 ntBASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Smc1aQ9CU62 Gm19863-201ENSMUST00000192480 2218 ntBASIC16.13■□□□□ 0.17
Smc1aQ9CU62 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Gm14780-201ENSMUST00000118387 2737 ntBASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Slc8a3-203ENSMUST00000182208 3433 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Mir7023-201ENSMUST00000185093 64 ntBASIC16.12■□□□□ 0.17
Smc1aQ9CU62 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC16.12■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 54.3 ms