Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Brf1Q8CFK2 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Brf1Q8CFK2 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Brf1Q8CFK2 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Brf1Q8CFK2 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Brf1Q8CFK2 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC17.43■□□□□ 0.38
Brf1Q8CFK2 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Brf1Q8CFK2 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC17.43■□□□□ 0.38
Brf1Q8CFK2 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Brf1Q8CFK2 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Brf1Q8CFK2 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Brf1Q8CFK2 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Brf1Q8CFK2 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Gm9824-201ENSMUST00000178707 561 ntBASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Gm29541-201ENSMUST00000191351 678 ntBASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Gm5312-201ENSMUST00000203728 547 ntBASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Gm18049-201ENSMUST00000208909 581 ntBASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Gm8396-201ENSMUST00000057361 823 ntBASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Cldn14-204ENSMUST00000169391 1456 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Brf1Q8CFK2 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm24158-201ENSMUST00000175263 71 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm29310-201ENSMUST00000185468 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm21825-201ENSMUST00000185728 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm29109-201ENSMUST00000185895 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm21896-201ENSMUST00000186520 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm21873-201ENSMUST00000186728 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm21794-201ENSMUST00000187056 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm21880-201ENSMUST00000187275 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm21826-201ENSMUST00000187451 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm21198-201ENSMUST00000188393 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm21749-201ENSMUST00000189343 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm21901-201ENSMUST00000189568 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm29424-201ENSMUST00000189716 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm28599-201ENSMUST00000189838 694 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm21867-201ENSMUST00000189917 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm29269-201ENSMUST00000190087 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm21722-201ENSMUST00000190153 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm28423-201ENSMUST00000190701 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm21899-201ENSMUST00000190745 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm21910-201ENSMUST00000191163 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm21849-201ENSMUST00000191571 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm28678-201ENSMUST00000191593 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm20910-201ENSMUST00000193268 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm21871-201ENSMUST00000194621 696 ntBASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Brf1Q8CFK2 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms