Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Gm8652-201ENSMUST00000181363 964 ntBASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Gm42693-201ENSMUST00000196779 631 ntBASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Gm44608-201ENSMUST00000206827 855 ntBASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 AC192088.1-201ENSMUST00000227561 301 ntBASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ddx55Q6ZPL9 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Gm8775-201ENSMUST00000170943 1327 ntBASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Gm12928-201ENSMUST00000117115 573 ntBASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Gm11524-201ENSMUST00000119349 807 ntBASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Gm37424-201ENSMUST00000191727 561 ntBASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 AC140451.2-201ENSMUST00000228030 664 ntBASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Ddx55Q6ZPL9 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Arpp19-201ENSMUST00000007800 4046 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Orc6-202ENSMUST00000170141 1466 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Zscan30-202ENSMUST00000224144 1458 ntBASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Ins2-205ENSMUST00000105933 552 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Ins2-206ENSMUST00000105934 480 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Pnpo-202ENSMUST00000107629 681 ntTSL 3 BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Gm10478-201ENSMUST00000084451 396 ntBASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Ddx55Q6ZPL9 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Gm15376-201ENSMUST00000122258 783 ntBASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC16.28■□□□□ 0.2
Ddx55Q6ZPL9 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 68.5 ms