Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Rhot1-202ENSMUST00000055056 4260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Hmgb4Q6P8W9 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Gm27306-201ENSMUST00000183970 107 ntBASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Klf15-203ENSMUST00000203039 2482 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 AC158529.1-201ENSMUST00000223618 239 ntBASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Hmgb4Q6P8W9 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Gm28630-201ENSMUST00000187806 498 ntBASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Gm2423-201ENSMUST00000074863 733 ntBASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC15.12■□□□□ 0.01
Hmgb4Q6P8W9 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Gm6756-201ENSMUST00000180647 1620 ntBASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Hmgb4Q6P8W9 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms