Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC18.61■□□□□ 0.57
Trim28Q62318 Gm12138-201ENSMUST00000122180 951 ntBASIC18.61■□□□□ 0.57
Trim28Q62318 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Trim28Q62318 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 Gm8515-201ENSMUST00000194852 576 ntBASIC18.61■□□□□ 0.57
Trim28Q62318 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Trim28Q62318 Gm17795-201ENSMUST00000214505 757 ntBASIC18.61■□□□□ 0.57
Trim28Q62318 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Trim28Q62318 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC18.61■□□□□ 0.57
Trim28Q62318 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 Fam192a-201ENSMUST00000034226 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC18.61■□□□□ 0.57
Trim28Q62318 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Trim28Q62318 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 AC126549.2-201ENSMUST00000223997 1976 ntBASIC18.61■□□□□ 0.57
Trim28Q62318 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Trim28Q62318 Gm20465-201ENSMUST00000174768 1932 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim28Q62318 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim28Q62318 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim28Q62318 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim28Q62318 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim28Q62318 Gm15163-201ENSMUST00000120749 1302 ntBASIC18.6■□□□□ 0.57
Trim28Q62318 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim28Q62318 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC18.6■□□□□ 0.57
Trim28Q62318 Gm6745-201ENSMUST00000199216 526 ntBASIC18.6■□□□□ 0.57
Trim28Q62318 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC18.6■□□□□ 0.57
Trim28Q62318 Gm9908-201ENSMUST00000211534 448 ntBASIC18.6■□□□□ 0.57
Trim28Q62318 Gm19220-201ENSMUST00000222682 803 ntBASIC18.6■□□□□ 0.57
Trim28Q62318 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim28Q62318 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
Trim28Q62318 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Trim28Q62318 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.6■□□□□ 0.57
Trim28Q62318 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Trim28Q62318 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim28Q62318 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim28Q62318 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Trim28Q62318 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Trim28Q62318 AC114543.1-201ENSMUST00000226451 1558 ntBASIC18.59■□□□□ 0.57
Trim28Q62318 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim28Q62318 AC154527.2-201ENSMUST00000225256 1466 ntBASIC18.59■□□□□ 0.57
Trim28Q62318 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC18.59■□□□□ 0.57
Trim28Q62318 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim28Q62318 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trim28Q62318 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim28Q62318 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim28Q62318 Gm42471-201ENSMUST00000201457 1865 ntBASIC18.59■□□□□ 0.57
Trim28Q62318 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim28Q62318 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim28Q62318 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Trim28Q62318 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC18.59■□□□□ 0.57
Trim28Q62318 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC18.59■□□□□ 0.57
Trim28Q62318 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
Trim28Q62318 Gm45504-201ENSMUST00000211407 2107 ntBASIC18.59■□□□□ 0.57
Trim28Q62318 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim28Q62318 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim28Q62318 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim28Q62318 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Trim28Q62318 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim28Q62318 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC18.58■□□□□ 0.57
Trim28Q62318 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim28Q62318 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Trim28Q62318 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Trim28Q62318 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC18.58■□□□□ 0.57
Trim28Q62318 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Trim28Q62318 Gm9115-201ENSMUST00000120192 1348 ntBASIC18.58■□□□□ 0.57
Trim28Q62318 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim28Q62318 Gm15678-201ENSMUST00000117573 960 ntBASIC18.58■□□□□ 0.56
Trim28Q62318 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
Trim28Q62318 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Trim28Q62318 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC18.58■□□□□ 0.56
Trim28Q62318 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC18.58■□□□□ 0.56
Trim28Q62318 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC18.58■□□□□ 0.56
Trim28Q62318 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Trim28Q62318 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim28Q62318 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim28Q62318 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim28Q62318 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim28Q62318 Ckmt1-202ENSMUST00000078222 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim28Q62318 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim28Q62318 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim28Q62318 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC18.58■□□□□ 0.56
Trim28Q62318 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Trim28Q62318 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Trim28Q62318 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim28Q62318 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC18.57■□□□□ 0.56
Trim28Q62318 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Trim28Q62318 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Trim28Q62318 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Trim28Q62318 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC18.57■□□□□ 0.56
Trim28Q62318 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC18.57■□□□□ 0.56
Trim28Q62318 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms