Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col17a1Q07563 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC21.7■■□□□ 1.06
Col17a1Q07563 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col17a1Q07563 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col17a1Q07563 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Col17a1Q07563 Gm45684-201ENSMUST00000210244 1571 ntBASIC21.7■■□□□ 1.06
Col17a1Q07563 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col17a1Q07563 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col17a1Q07563 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Col17a1Q07563 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC21.7■■□□□ 1.06
Col17a1Q07563 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col17a1Q07563 Gm11618-201ENSMUST00000117946 267 ntBASIC21.7■■□□□ 1.06
Col17a1Q07563 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Col17a1Q07563 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col17a1Q07563 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
Col17a1Q07563 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col17a1Q07563 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Col17a1Q07563 CU062626.3-201ENSMUST00000225522 1411 ntBASIC21.69■■□□□ 1.06
Col17a1Q07563 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col17a1Q07563 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col17a1Q07563 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Col17a1Q07563 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC21.69■■□□□ 1.06
Col17a1Q07563 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col17a1Q07563 AC153526.5-201ENSMUST00000218661 2147 ntBASIC21.69■■□□□ 1.06
Col17a1Q07563 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col17a1Q07563 Gm12816-201ENSMUST00000118069 1212 ntBASIC21.69■■□□□ 1.06
Col17a1Q07563 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Col17a1Q07563 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC21.69■■□□□ 1.06
Col17a1Q07563 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC21.69■■□□□ 1.06
Col17a1Q07563 Gm19459-201ENSMUST00000176240 835 ntBASIC21.69■■□□□ 1.06
Col17a1Q07563 Pbx2-205ENSMUST00000183827 1186 ntTSL 5 BASIC21.69■■□□□ 1.06
Col17a1Q07563 Gm31256-201ENSMUST00000194705 506 ntBASIC21.69■■□□□ 1.06
Col17a1Q07563 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col17a1Q07563 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Col17a1Q07563 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col17a1Q07563 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col17a1Q07563 Gm5879-201ENSMUST00000089501 1209 ntBASIC21.69■■□□□ 1.06
Col17a1Q07563 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col17a1Q07563 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Col17a1Q07563 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Col17a1Q07563 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Col17a1Q07563 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC21.68■■□□□ 1.06
Col17a1Q07563 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col17a1Q07563 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Col17a1Q07563 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Col17a1Q07563 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC21.68■■□□□ 1.06
Col17a1Q07563 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC21.68■■□□□ 1.06
Col17a1Q07563 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC21.68■■□□□ 1.06
Col17a1Q07563 Gm23699-201ENSMUST00000158835 135 ntBASIC21.68■■□□□ 1.06
Col17a1Q07563 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC21.68■■□□□ 1.06
Col17a1Q07563 AC125486.1-201ENSMUST00000218701 320 ntBASIC21.68■■□□□ 1.06
Col17a1Q07563 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
Col17a1Q07563 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col17a1Q07563 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Col17a1Q07563 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Col17a1Q07563 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Col17a1Q07563 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col17a1Q07563 Slc41a3-202ENSMUST00000044019 2412 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Col17a1Q07563 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col17a1Q07563 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col17a1Q07563 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Col17a1Q07563 Igsf5-202ENSMUST00000081093 1554 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Col17a1Q07563 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
Col17a1Q07563 Gm13123-201ENSMUST00000122173 492 ntBASIC21.67■■□□□ 1.06
Col17a1Q07563 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Col17a1Q07563 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
Col17a1Q07563 Gm16029-201ENSMUST00000161643 2427 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Col17a1Q07563 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
Col17a1Q07563 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Col17a1Q07563 Gm44999-201ENSMUST00000207456 1493 ntBASIC21.67■■□□□ 1.06
Col17a1Q07563 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Col17a1Q07563 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col17a1Q07563 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Col17a1Q07563 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col17a1Q07563 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col17a1Q07563 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Col17a1Q07563 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC21.66■■□□□ 1.06
Col17a1Q07563 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC21.66■■□□□ 1.06
Col17a1Q07563 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col17a1Q07563 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC21.66■■□□□ 1.06
Col17a1Q07563 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC21.66■■□□□ 1.06
Col17a1Q07563 4930448E22Rik-203ENSMUST00000215349 299 ntTSL 3 BASIC21.66■■□□□ 1.06
Col17a1Q07563 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC21.66■■□□□ 1.06
Col17a1Q07563 AC022775.2-201ENSMUST00000227885 646 ntBASIC21.66■■□□□ 1.06
Col17a1Q07563 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Col17a1Q07563 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col17a1Q07563 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Col17a1Q07563 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Col17a1Q07563 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC21.66■■□□□ 1.06
Col17a1Q07563 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col17a1Q07563 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Col17a1Q07563 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col17a1Q07563 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Col17a1Q07563 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Col17a1Q07563 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC21.65■■□□□ 1.06
Col17a1Q07563 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
Col17a1Q07563 Gm13886-201ENSMUST00000117876 1183 ntBASIC21.65■■□□□ 1.06
Col17a1Q07563 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Col17a1Q07563 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC21.65■■□□□ 1.06
Col17a1Q07563 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms