Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm21899-201ENSMUST00000190745 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm21910-201ENSMUST00000191163 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm21849-201ENSMUST00000191571 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm28678-201ENSMUST00000191593 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm20910-201ENSMUST00000193268 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Gm21871-201ENSMUST00000194621 696 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 AC154846.1-201ENSMUST00000226278 862 ntBASIC12.29□□□□□ -0.44
Col8a1Q00780 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC12.29□□□□□ -0.44
Col8a1Q00780 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC12.29□□□□□ -0.44
Col8a1Q00780 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC12.29□□□□□ -0.44
Col8a1Q00780 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
Col8a1Q00780 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Col8a1Q00780 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Col8a1Q00780 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Col8a1Q00780 Olfr718-ps1-203ENSMUST00000215102 4913 ntAPPRIS P5 TSL 5 BASIC12.28□□□□□ -0.44
Col8a1Q00780 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Col8a1Q00780 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Col8a1Q00780 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC12.28□□□□□ -0.44
Col8a1Q00780 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Gm12390-201ENSMUST00000117897 397 ntBASIC12.28□□□□□ -0.44
Col8a1Q00780 Ldha-ps-201ENSMUST00000119390 995 ntBASIC12.28□□□□□ -0.44
Col8a1Q00780 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC12.28□□□□□ -0.44
Col8a1Q00780 Gm8062-201ENSMUST00000139696 444 ntBASIC12.28□□□□□ -0.44
Col8a1Q00780 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC12.28□□□□□ -0.44
Col8a1Q00780 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC12.28□□□□□ -0.44
Col8a1Q00780 Gm44799-201ENSMUST00000207639 1202 ntBASIC12.28□□□□□ -0.44
Col8a1Q00780 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC12.28□□□□□ -0.44
Col8a1Q00780 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC12.28□□□□□ -0.44
Col8a1Q00780 AC159896.2-201ENSMUST00000214753 269 ntBASIC12.28□□□□□ -0.44
Col8a1Q00780 AC154319.1-201ENSMUST00000216330 312 ntBASIC12.28□□□□□ -0.44
Col8a1Q00780 Gm9229-201ENSMUST00000222777 126 ntBASIC12.28□□□□□ -0.44
Col8a1Q00780 AL589735.1-201ENSMUST00000224353 270 ntBASIC12.28□□□□□ -0.44
Col8a1Q00780 AC150560.1-201ENSMUST00000227731 1187 ntBASIC12.28□□□□□ -0.44
Col8a1Q00780 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.44
Col8a1Q00780 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Col8a1Q00780 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Col8a1Q00780 Gm38058-201ENSMUST00000194323 4368 ntBASIC12.28□□□□□ -0.44
Col8a1Q00780 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
Col8a1Q00780 Entpd6-201ENSMUST00000094467 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Col8a1Q00780 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
Col8a1Q00780 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Col8a1Q00780 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
Col8a1Q00780 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Col8a1Q00780 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
Col8a1Q00780 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Col8a1Q00780 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Col8a1Q00780 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Col8a1Q00780 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col8a1Q00780 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.45
Col8a1Q00780 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col8a1Q00780 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Col8a1Q00780 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Col8a1Q00780 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC12.27□□□□□ -0.45
Col8a1Q00780 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col8a1Q00780 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC12.27□□□□□ -0.45
Col8a1Q00780 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Col8a1Q00780 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Col8a1Q00780 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col8a1Q00780 Gm27839-201ENSMUST00000184242 106 ntBASIC12.27□□□□□ -0.45
Col8a1Q00780 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC12.27□□□□□ -0.45
Col8a1Q00780 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Col8a1Q00780 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC12.27□□□□□ -0.45
Col8a1Q00780 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col8a1Q00780 AC140451.2-201ENSMUST00000228030 664 ntBASIC12.27□□□□□ -0.45
Col8a1Q00780 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Col8a1Q00780 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC12.27□□□□□ -0.45
Col8a1Q00780 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Col8a1Q00780 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Col8a1Q00780 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 78.7 ms