Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Gm45504-201ENSMUST00000211407 2107 ntBASIC15.25■□□□□ 0.03
Shmt1P50431 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Shmt1P50431 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Shmt1P50431 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC15.24■□□□□ 0.03
Shmt1P50431 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Prrx1-202ENSMUST00000075805 4986 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 F420014N23Rik-201ENSMUST00000181578 2396 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Shmt1P50431 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
Shmt1P50431 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Gm13453-201ENSMUST00000118708 357 ntBASIC15.24■□□□□ 0.03
Shmt1P50431 Gm12151-201ENSMUST00000121374 290 ntBASIC15.24■□□□□ 0.03
Shmt1P50431 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Gm16476-201ENSMUST00000221544 139 ntBASIC15.24■□□□□ 0.03
Shmt1P50431 Gm5626-201ENSMUST00000222151 1058 ntBASIC15.24■□□□□ 0.03
Shmt1P50431 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC15.24■□□□□ 0.03
Shmt1P50431 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC15.24■□□□□ 0.03
Shmt1P50431 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Shmt1P50431 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Adamts14-201ENSMUST00000092486 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC15.23■□□□□ 0.03
Shmt1P50431 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Shmt1P50431 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Shmt1P50431 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
Shmt1P50431 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC15.23■□□□□ 0.03
Shmt1P50431 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Gm14042-201ENSMUST00000120139 833 ntBASIC15.23■□□□□ 0.03
Shmt1P50431 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC15.23■□□□□ 0.03
Shmt1P50431 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Gm23547-201ENSMUST00000158210 271 ntBASIC15.23■□□□□ 0.03
Shmt1P50431 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC15.23■□□□□ 0.03
Shmt1P50431 Gm27306-201ENSMUST00000183970 107 ntBASIC15.23■□□□□ 0.03
Shmt1P50431 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Wdyhv1-206ENSMUST00000227142 786 ntBASIC15.23■□□□□ 0.03
Shmt1P50431 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC15.23■□□□□ 0.03
Shmt1P50431 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Shmt1P50431 Gm37297-201ENSMUST00000192974 2384 ntBASIC15.22■□□□□ 0.03
Shmt1P50431 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Shmt1P50431 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Shmt1P50431 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC15.22■□□□□ 0.03
Shmt1P50431 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC15.22■□□□□ 0.03
Shmt1P50431 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 1700007J10Rik-202ENSMUST00000153431 1111 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Shmt1P50431 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC15.22■□□□□ 0.03
Shmt1P50431 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC15.22■□□□□ 0.03
Shmt1P50431 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Shmt1P50431 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Shmt1P50431 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms