Protein–RNA interactions for Protein: P09633

Hoxc9, Homeobox protein Hox-C9, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxc9P09633 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Hoxc9P09633 Gm5356-201ENSMUST00000093326 615 ntBASIC18.57■□□□□ 0.56
Hoxc9P09633 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hoxc9P09633 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hoxc9P09633 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hoxc9P09633 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hoxc9P09633 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hoxc9P09633 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hoxc9P09633 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hoxc9P09633 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Hoxc9P09633 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Hoxc9P09633 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Hoxc9P09633 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC18.56■□□□□ 0.56
Hoxc9P09633 AC153962.4-201ENSMUST00000217878 242 ntBASIC18.56■□□□□ 0.56
Hoxc9P09633 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
Hoxc9P09633 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Hoxc9P09633 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC18.56■□□□□ 0.56
Hoxc9P09633 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Hoxc9P09633 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Hoxc9P09633 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
Hoxc9P09633 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 Adck5-207ENSMUST00000160784 1998 ntTSL 5 BASIC18.55■□□□□ 0.56
Hoxc9P09633 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 Psrc1-202ENSMUST00000102629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC18.55■□□□□ 0.56
Hoxc9P09633 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC18.55■□□□□ 0.56
Hoxc9P09633 Gm43094-201ENSMUST00000196549 921 ntBASIC18.55■□□□□ 0.56
Hoxc9P09633 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 Srgn-201ENSMUST00000020271 938 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 Gm19078-201ENSMUST00000206311 727 ntBASIC18.55■□□□□ 0.56
Hoxc9P09633 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC18.55■□□□□ 0.56
Hoxc9P09633 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 Gm9109-201ENSMUST00000120254 1405 ntBASIC18.55■□□□□ 0.56
Hoxc9P09633 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Hoxc9P09633 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Hoxc9P09633 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Hoxc9P09633 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hoxc9P09633 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hoxc9P09633 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hoxc9P09633 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Hoxc9P09633 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hoxc9P09633 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hoxc9P09633 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hoxc9P09633 Mettl3-201ENSMUST00000022767 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hoxc9P09633 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hoxc9P09633 Hdac10-202ENSMUST00000109347 1824 ntTSL 5 BASIC18.54■□□□□ 0.56
Hoxc9P09633 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hoxc9P09633 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hoxc9P09633 AY702102-202ENSMUST00000194651 1173 ntBASIC18.54■□□□□ 0.56
Hoxc9P09633 Gm8463-201ENSMUST00000208573 613 ntBASIC18.54■□□□□ 0.56
Hoxc9P09633 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC18.54■□□□□ 0.56
Hoxc9P09633 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Hoxc9P09633 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
Hoxc9P09633 Gm9899-201ENSMUST00000065519 555 ntBASIC18.54■□□□□ 0.56
Hoxc9P09633 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hoxc9P09633 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Hoxc9P09633 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Hoxc9P09633 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Hoxc9P09633 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Hoxc9P09633 Gm37305-201ENSMUST00000195714 4279 ntBASIC18.54■□□□□ 0.56
Hoxc9P09633 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hoxc9P09633 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Hoxc9P09633 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC18.54■□□□□ 0.56
Hoxc9P09633 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hoxc9P09633 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hoxc9P09633 AC114008.2-201ENSMUST00000227699 1347 ntBASIC18.53■□□□□ 0.56
Hoxc9P09633 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hoxc9P09633 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hoxc9P09633 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Hoxc9P09633 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Hoxc9P09633 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms