Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Ahcy-201ENSMUST00000054607 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 Gm4995-201ENSMUST00000117247 432 ntBASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 Gm13464-201ENSMUST00000119418 935 ntBASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 Mir1895-201ENSMUST00000122615 79 ntBASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 CT030684.1-201ENSMUST00000227292 914 ntBASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 Gm44645-201ENSMUST00000205492 1653 ntBASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
Prpf40aQ9R1C7 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Gm8749-201ENSMUST00000117737 331 ntBASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Gm27494-201ENSMUST00000184735 189 ntBASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Gm20553-201ENSMUST00000204205 844 ntBASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 AC126250.1-201ENSMUST00000228343 1768 ntBASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Prpf40aQ9R1C7 Tsc22d4-203ENSMUST00000100540 2730 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Nupl1-207ENSMUST00000225311 2475 ntBASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 AC073947.1-201ENSMUST00000216991 649 ntBASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC15.89■□□□□ 0.13
Prpf40aQ9R1C7 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Gm18737-201ENSMUST00000173594 937 ntBASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Prpf40aQ9R1C7 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms