Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Gm13665-201ENSMUST00000120830 528 ntBASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 AA914427-201ENSMUST00000193194 1166 ntBASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 AC126253.1-202ENSMUST00000226732 835 ntBASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Mfap4-202ENSMUST00000064783 1722 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Scn4aQ9ER60 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Gm5884-201ENSMUST00000036712 1479 ntBASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Rarb-207ENSMUST00000225921 2756 ntBASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Gm44064-201ENSMUST00000204964 1087 ntBASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Gm45118-201ENSMUST00000208928 825 ntBASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Scn4aQ9ER60 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Gm18393-201ENSMUST00000208349 1131 ntBASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Gm44551-201ENSMUST00000208804 171 ntBASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 AC022775.2-201ENSMUST00000227885 646 ntBASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Gm14608-201ENSMUST00000120030 1553 ntBASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Gm10782-202ENSMUST00000223775 1480 ntBASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Gm16479-201ENSMUST00000121706 932 ntBASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Scn4aQ9ER60 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scn4aQ9ER60 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC19.27■□□□□ 0.68
Scn4aQ9ER60 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scn4aQ9ER60 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scn4aQ9ER60 Rpl38-204ENSMUST00000106602 371 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scn4aQ9ER60 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC19.27■□□□□ 0.68
Scn4aQ9ER60 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC19.27■□□□□ 0.68
Scn4aQ9ER60 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC19.27■□□□□ 0.68
Scn4aQ9ER60 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Scn4aQ9ER60 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Scn4aQ9ER60 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn4aQ9ER60 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn4aQ9ER60 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Scn4aQ9ER60 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn4aQ9ER60 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC19.26■□□□□ 0.67
Scn4aQ9ER60 Gm5781-201ENSMUST00000219792 443 ntBASIC19.26■□□□□ 0.67
Scn4aQ9ER60 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Scn4aQ9ER60 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC19.26■□□□□ 0.67
Scn4aQ9ER60 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn4aQ9ER60 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn4aQ9ER60 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn4aQ9ER60 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC19.26■□□□□ 0.67
Scn4aQ9ER60 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn4aQ9ER60 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn4aQ9ER60 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 51 ms