Protein–RNA interactions for Protein: Q9D3E6

Stag1, Cohesin subunit SA-1, mousemouse

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Stag1Q9D3E6 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Stag1Q9D3E6 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Stag1Q9D3E6 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Gm12490-201ENSMUST00000120255 560 ntBASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Carlr-201ENSMUST00000181515 2574 ntBASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Ldb3-207ENSMUST00000227819 1499 ntBASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC17.18■□□□□ 0.34
Stag1Q9D3E6 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Gm21854-201ENSMUST00000179901 471 ntBASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Gm28631-201ENSMUST00000190740 334 ntBASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 AC121598.1-201ENSMUST00000228224 1019 ntBASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Sybu-209ENSMUST00000228639 4113 ntBASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Gm16425-201ENSMUST00000118143 3130 ntBASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Stag1Q9D3E6 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Stag1Q9D3E6 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
Stag1Q9D3E6 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Stag1Q9D3E6 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Stag1Q9D3E6 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Stag1Q9D3E6 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Stag1Q9D3E6 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Stag1Q9D3E6 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Stag1Q9D3E6 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC17.15■□□□□ 0.34
Stag1Q9D3E6 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Stag1Q9D3E6 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC17.15■□□□□ 0.34
Stag1Q9D3E6 AC154239.3-201ENSMUST00000226933 674 ntBASIC17.15■□□□□ 0.34
Stag1Q9D3E6 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Stag1Q9D3E6 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Stag1Q9D3E6 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Stag1Q9D3E6 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 66.6 ms