Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Gm13994-201ENSMUST00000137397 513 ntTSL 5 BASIC20.31■□□□□ 0.84
Usp47Q8BY87 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Sf3a2-204ENSMUST00000151928 781 ntTSL 5 BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Gm9522-201ENSMUST00000182394 926 ntBASIC20.31■□□□□ 0.84
Usp47Q8BY87 2900022M07Rik-201ENSMUST00000193912 1017 ntBASIC20.31■□□□□ 0.84
Usp47Q8BY87 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Usp47Q8BY87 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Usp47Q8BY87 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp47Q8BY87 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp47Q8BY87 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp47Q8BY87 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC20.3■□□□□ 0.84
Usp47Q8BY87 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp47Q8BY87 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp47Q8BY87 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Usp47Q8BY87 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC20.3■□□□□ 0.84
Usp47Q8BY87 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC20.3■□□□□ 0.84
Usp47Q8BY87 AC154806.6-201ENSMUST00000228192 202 ntBASIC20.3■□□□□ 0.84
Usp47Q8BY87 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp47Q8BY87 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Usp47Q8BY87 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Usp47Q8BY87 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp47Q8BY87 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Usp47Q8BY87 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp47Q8BY87 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp47Q8BY87 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Usp47Q8BY87 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp47Q8BY87 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC20.29■□□□□ 0.84
Usp47Q8BY87 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp47Q8BY87 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC20.29■□□□□ 0.84
Usp47Q8BY87 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Usp47Q8BY87 Gm45785-201ENSMUST00000209690 988 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Usp47Q8BY87 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp47Q8BY87 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp47Q8BY87 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp47Q8BY87 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp47Q8BY87 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp47Q8BY87 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp47Q8BY87 Gm6159-201ENSMUST00000191249 1724 ntBASIC20.29■□□□□ 0.84
Usp47Q8BY87 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Usp47Q8BY87 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Usp47Q8BY87 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Cd3d-201ENSMUST00000034602 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Gm21854-201ENSMUST00000179901 471 ntBASIC20.28■□□□□ 0.84
Usp47Q8BY87 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Wdyhv1-206ENSMUST00000227142 786 ntBASIC20.28■□□□□ 0.84
Usp47Q8BY87 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC20.28■□□□□ 0.84
Usp47Q8BY87 Gm20445-201ENSMUST00000061905 565 ntBASIC20.28■□□□□ 0.84
Usp47Q8BY87 Obp2a-201ENSMUST00000077667 744 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 AC121801.1-201ENSMUST00000225363 1899 ntBASIC20.28■□□□□ 0.84
Usp47Q8BY87 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Gm37411-201ENSMUST00000194180 2282 ntBASIC20.28■□□□□ 0.84
Usp47Q8BY87 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Usp47Q8BY87 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC20.27■□□□□ 0.84
Usp47Q8BY87 AC115735.4-201ENSMUST00000227460 1944 ntBASIC20.27■□□□□ 0.84
Usp47Q8BY87 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp47Q8BY87 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC20.27■□□□□ 0.84
Usp47Q8BY87 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Ppp1r14d-202ENSMUST00000110820 790 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
Usp47Q8BY87 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Usp47Q8BY87 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms