Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ccdc40Q8BI79 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ccdc40Q8BI79 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC15.11■□□□□ 0.01
Ccdc40Q8BI79 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ccdc40Q8BI79 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Ccdc40Q8BI79 Gm45638-201ENSMUST00000211507 2878 ntBASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Gm1401-201ENSMUST00000122048 772 ntBASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Thap2-203ENSMUST00000218989 527 ntBASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Ccdc40Q8BI79 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 St13-205ENSMUST00000172107 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Trav13-3-201ENSMUST00000117226 336 ntBASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 AC133598.3-202ENSMUST00000224219 531 ntBASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Ccdc40Q8BI79 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
Ccdc40Q8BI79 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Ccdc40Q8BI79 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Ccdc40Q8BI79 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ccdc40Q8BI79 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0.01
Ccdc40Q8BI79 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ccdc40Q8BI79 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Ccdc40Q8BI79 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Ccdc40Q8BI79 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 AC131743.5-201ENSMUST00000220775 1618 ntBASIC15.08■□□□□ 0
Ccdc40Q8BI79 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC15.08■□□□□ 0
Ccdc40Q8BI79 Gm5177-201ENSMUST00000183092 997 ntBASIC15.08■□□□□ 0
Ccdc40Q8BI79 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC15.08■□□□□ 0
Ccdc40Q8BI79 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Ccdc40Q8BI79 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Ccdc40Q8BI79 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms