Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Pgr-201ENSMUST00000070463 3068 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Pgr-202ENSMUST00000098986 3068 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Maged2-203ENSMUST00000112699 2183 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Ispd-205ENSMUST00000221895 4022 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Mmp14-206ENSMUST00000225641 3238 ntBASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Rnf220Q6PDX6 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Gm44454-201ENSMUST00000198541 138 ntBASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Paupar-201ENSMUST00000194826 3482 ntBASIC13.72□□□□□ -0.21
Rnf220Q6PDX6 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gm4609-201ENSMUST00000106443 1002 ntBASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gm5138-201ENSMUST00000113842 1002 ntBASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gm15191-201ENSMUST00000117933 1000 ntBASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gm12182-201ENSMUST00000118655 1008 ntBASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gm13882-201ENSMUST00000120886 1002 ntBASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gm10284-201ENSMUST00000145057 1005 ntBASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gm10481-201ENSMUST00000179228 1002 ntBASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gm2574-201ENSMUST00000181051 1002 ntBASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gm3200-201ENSMUST00000181493 1002 ntBASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gm8825-201ENSMUST00000182565 998 ntBASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gm4518-201ENSMUST00000182638 718 ntBASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gm8330-201ENSMUST00000182754 1008 ntBASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gm4575-201ENSMUST00000182991 1002 ntBASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gm8709-201ENSMUST00000183230 1012 ntBASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gm10293-201ENSMUST00000076317 1002 ntBASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Gm6316-201ENSMUST00000082064 1020 ntBASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Rnf220Q6PDX6 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Rnf220Q6PDX6 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
Rnf220Q6PDX6 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.22
Rnf220Q6PDX6 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Rnf220Q6PDX6 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Rnf220Q6PDX6 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Rnf220Q6PDX6 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Rnf220Q6PDX6 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms