Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC18.65■□□□□ 0.58
Trim28Q62318 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim28Q62318 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim28Q62318 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Trim28Q62318 Tmem211-201ENSMUST00000086615 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim28Q62318 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.65■□□□□ 0.58
Trim28Q62318 Dnajb2-210ENSMUST00000188931 3066 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Trim28Q62318 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
Trim28Q62318 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim28Q62318 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim28Q62318 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Trim28Q62318 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
Trim28Q62318 Cenpl-203ENSMUST00000111620 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Trim28Q62318 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Trim28Q62318 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
Trim28Q62318 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 AC159196.2-201ENSMUST00000224082 1622 ntBASIC18.64■□□□□ 0.57
Trim28Q62318 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Trim28Q62318 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Trim28Q62318 4930412M03Rik-201ENSMUST00000130746 1111 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC18.64■□□□□ 0.57
Trim28Q62318 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC18.64■□□□□ 0.57
Trim28Q62318 Gm5354-201ENSMUST00000182417 973 ntBASIC18.64■□□□□ 0.57
Trim28Q62318 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Trim28Q62318 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 9430085M18Rik-201ENSMUST00000198824 1178 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Gm5279-201ENSMUST00000199575 745 ntBASIC18.64■□□□□ 0.57
Trim28Q62318 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC18.64■□□□□ 0.57
Trim28Q62318 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Trim28Q62318 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Trim28Q62318 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Trim28Q62318 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Trim28Q62318 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim28Q62318 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim28Q62318 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC18.63■□□□□ 0.57
Trim28Q62318 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC18.63■□□□□ 0.57
Trim28Q62318 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim28Q62318 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Trim28Q62318 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim28Q62318 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC18.63■□□□□ 0.57
Trim28Q62318 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC18.63■□□□□ 0.57
Trim28Q62318 Gm23984-201ENSMUST00000157139 203 ntBASIC18.63■□□□□ 0.57
Trim28Q62318 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC18.63■□□□□ 0.57
Trim28Q62318 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim28Q62318 9130008F23Rik-201ENSMUST00000068258 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim28Q62318 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
Trim28Q62318 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Trim28Q62318 Krt36-201ENSMUST00000107416 1671 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Trim28Q62318 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Trim28Q62318 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC18.63■□□□□ 0.57
Trim28Q62318 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Trim28Q62318 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim28Q62318 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Trim28Q62318 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trim28Q62318 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim28Q62318 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim28Q62318 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim28Q62318 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC18.62■□□□□ 0.57
Trim28Q62318 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trim28Q62318 Iqcf1-202ENSMUST00000164965 523 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim28Q62318 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Trim28Q62318 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim28Q62318 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC18.62■□□□□ 0.57
Trim28Q62318 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim28Q62318 Gm5425-201ENSMUST00000214125 459 ntBASIC18.62■□□□□ 0.57
Trim28Q62318 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
Trim28Q62318 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim28Q62318 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim28Q62318 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim28Q62318 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
Trim28Q62318 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
Trim28Q62318 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim28Q62318 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC18.62■□□□□ 0.57
Trim28Q62318 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim28Q62318 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Trim28Q62318 Gm37411-201ENSMUST00000194180 2282 ntBASIC18.62■□□□□ 0.57
Trim28Q62318 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Trim28Q62318 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC18.61■□□□□ 0.57
Trim28Q62318 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Trim28Q62318 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC18.61■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 36.3 ms