Protein–RNA interactions for Protein: Q62018

Ctr9, RNA polymerase-associated protein CTR9 homolog, mousemouse

Known RBP Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ctr9Q62018 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ctr9Q62018 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Ctr9Q62018 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC17.05■□□□□ 0.32
Ctr9Q62018 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Ctr9Q62018 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ctr9Q62018 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ctr9Q62018 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC17.04■□□□□ 0.32
Ctr9Q62018 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ctr9Q62018 Gm6222-201ENSMUST00000120787 396 ntBASIC17.04■□□□□ 0.32
Ctr9Q62018 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC17.04■□□□□ 0.32
Ctr9Q62018 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC17.04■□□□□ 0.32
Ctr9Q62018 Shd-206ENSMUST00000225145 998 ntBASIC17.04■□□□□ 0.32
Ctr9Q62018 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ctr9Q62018 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ctr9Q62018 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ctr9Q62018 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ctr9Q62018 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Ctr9Q62018 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Ctr9Q62018 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
Ctr9Q62018 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
Ctr9Q62018 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Ctr9Q62018 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Ctr9Q62018 Gm37305-201ENSMUST00000195714 4279 ntBASIC17.04■□□□□ 0.32
Ctr9Q62018 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC17.03■□□□□ 0.32
Ctr9Q62018 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC17.03■□□□□ 0.32
Ctr9Q62018 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
Ctr9Q62018 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC17.03■□□□□ 0.32
Ctr9Q62018 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC17.03■□□□□ 0.32
Ctr9Q62018 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC17.03■□□□□ 0.32
Ctr9Q62018 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 Gm12428-201ENSMUST00000119844 727 ntBASIC17.03■□□□□ 0.32
Ctr9Q62018 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Ctr9Q62018 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC17.03■□□□□ 0.32
Ctr9Q62018 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 Poli-201ENSMUST00000043286 2591 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC17.03■□□□□ 0.32
Ctr9Q62018 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Ctr9Q62018 Gm9252-201ENSMUST00000172364 1602 ntBASIC17.03■□□□□ 0.32
Ctr9Q62018 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Ctr9Q62018 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ctr9Q62018 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Ctr9Q62018 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ctr9Q62018 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ctr9Q62018 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC17.02■□□□□ 0.32
Ctr9Q62018 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ctr9Q62018 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Ctr9Q62018 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC17.02■□□□□ 0.32
Ctr9Q62018 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ctr9Q62018 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Ctr9Q62018 Gm27989-201ENSMUST00000184721 107 ntBASIC17.02■□□□□ 0.32
Ctr9Q62018 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Ctr9Q62018 Gm9063-201ENSMUST00000223299 582 ntBASIC17.02■□□□□ 0.32
Ctr9Q62018 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ctr9Q62018 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ctr9Q62018 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ctr9Q62018 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Ctr9Q62018 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Ctr9Q62018 Endod1-201ENSMUST00000167549 4470 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ctr9Q62018 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ctr9Q62018 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ctr9Q62018 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ctr9Q62018 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Ctr9Q62018 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Ctr9Q62018 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ctr9Q62018 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ctr9Q62018 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ctr9Q62018 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Ctr9Q62018 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ctr9Q62018 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ctr9Q62018 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Ctr9Q62018 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ctr9Q62018 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
Ctr9Q62018 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Ctr9Q62018 Clstn1-201ENSMUST00000039144 3319 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ctr9Q62018 Gm10275-202ENSMUST00000168697 495 ntBASIC17.01■□□□□ 0.31
Ctr9Q62018 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ctr9Q62018 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Ctr9Q62018 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC17.01■□□□□ 0.31
Ctr9Q62018 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Ctr9Q62018 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Ctr9Q62018 Gm16476-201ENSMUST00000221544 139 ntBASIC17.01■□□□□ 0.31
Ctr9Q62018 AC123645.1-201ENSMUST00000228469 605 ntBASIC17.01■□□□□ 0.31
Ctr9Q62018 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Ctr9Q62018 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Ctr9Q62018 Gm10275-201ENSMUST00000092620 635 ntBASIC17.01■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms