Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
ClpbQ60649 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ClpbQ60649 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
ClpbQ60649 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
ClpbQ60649 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC13.89□□□□□ -0.19
ClpbQ60649 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ClpbQ60649 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ClpbQ60649 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ClpbQ60649 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
ClpbQ60649 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
ClpbQ60649 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ClpbQ60649 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
ClpbQ60649 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
ClpbQ60649 Gm11543-201ENSMUST00000120758 370 ntBASIC13.88□□□□□ -0.19
ClpbQ60649 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC13.88□□□□□ -0.19
ClpbQ60649 Gm18889-201ENSMUST00000174284 929 ntBASIC13.88□□□□□ -0.19
ClpbQ60649 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
ClpbQ60649 Mir6990-201ENSMUST00000183724 91 ntBASIC13.88□□□□□ -0.19
ClpbQ60649 Gm44335-201ENSMUST00000196879 141 ntBASIC13.88□□□□□ -0.19
ClpbQ60649 Gm44297-201ENSMUST00000198304 141 ntBASIC13.88□□□□□ -0.19
ClpbQ60649 Gm44346-201ENSMUST00000198851 141 ntBASIC13.88□□□□□ -0.19
ClpbQ60649 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC13.88□□□□□ -0.19
ClpbQ60649 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC13.88□□□□□ -0.19
ClpbQ60649 CT030684.1-201ENSMUST00000227292 914 ntBASIC13.88□□□□□ -0.19
ClpbQ60649 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ClpbQ60649 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ClpbQ60649 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
ClpbQ60649 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC13.88□□□□□ -0.19
ClpbQ60649 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
ClpbQ60649 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
ClpbQ60649 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
ClpbQ60649 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
ClpbQ60649 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
ClpbQ60649 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
ClpbQ60649 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Gm8597-201ENSMUST00000191525 1109 ntBASIC13.87□□□□□ -0.19
ClpbQ60649 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
ClpbQ60649 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
ClpbQ60649 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC13.87□□□□□ -0.19
ClpbQ60649 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC13.87□□□□□ -0.19
ClpbQ60649 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Echdc1-202ENSMUST00000160399 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC13.87□□□□□ -0.19
ClpbQ60649 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC13.87□□□□□ -0.19
ClpbQ60649 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC13.87□□□□□ -0.19
ClpbQ60649 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
ClpbQ60649 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 AC131743.5-201ENSMUST00000220775 1618 ntBASIC13.86□□□□□ -0.19
ClpbQ60649 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
ClpbQ60649 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Pxylp1-204ENSMUST00000120101 3189 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC13.86□□□□□ -0.19
ClpbQ60649 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC13.86□□□□□ -0.19
ClpbQ60649 Trav13-3-201ENSMUST00000117226 336 ntBASIC13.86□□□□□ -0.19
ClpbQ60649 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC13.86□□□□□ -0.19
ClpbQ60649 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC13.86□□□□□ -0.19
ClpbQ60649 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC13.86□□□□□ -0.19
ClpbQ60649 Gm18737-201ENSMUST00000173594 937 ntBASIC13.86□□□□□ -0.19
ClpbQ60649 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC13.86□□□□□ -0.19
ClpbQ60649 Gm5312-201ENSMUST00000203728 547 ntBASIC13.86□□□□□ -0.19
ClpbQ60649 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC13.86□□□□□ -0.19
ClpbQ60649 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
ClpbQ60649 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ClpbQ60649 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC13.86□□□□□ -0.19
ClpbQ60649 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 115.3 ms