Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Gm14451-201ENSMUST00000121581 1542 ntBASIC17.02■□□□□ 0.32
Limch1Q3UH68 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Limch1Q3UH68 CT025626.1-201ENSMUST00000223735 1455 ntBASIC17.02■□□□□ 0.32
Limch1Q3UH68 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Gm6944-201ENSMUST00000182449 1006 ntBASIC17.02■□□□□ 0.32
Limch1Q3UH68 Olfr286-202ENSMUST00000205305 969 ntBASIC17.02■□□□□ 0.32
Limch1Q3UH68 Gm18057-201ENSMUST00000208220 503 ntBASIC17.02■□□□□ 0.32
Limch1Q3UH68 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC17.02■□□□□ 0.32
Limch1Q3UH68 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
Limch1Q3UH68 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Limch1Q3UH68 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
Limch1Q3UH68 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Limch1Q3UH68 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC17.02■□□□□ 0.31
Limch1Q3UH68 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Limch1Q3UH68 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Limch1Q3UH68 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.31
Limch1Q3UH68 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Limch1Q3UH68 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Txndc11-202ENSMUST00000118362 4248 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Limch1Q3UH68 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Gm22175-201ENSMUST00000175007 78 ntBASIC17.01■□□□□ 0.31
Limch1Q3UH68 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
Limch1Q3UH68 Nupl1-207ENSMUST00000225311 2475 ntBASIC17.01■□□□□ 0.31
Limch1Q3UH68 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Limch1Q3UH68 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Limch1Q3UH68 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Limch1Q3UH68 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Limch1Q3UH68 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Limch1Q3UH68 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC17■□□□□ 0.31
Limch1Q3UH68 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Limch1Q3UH68 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC17■□□□□ 0.31
Limch1Q3UH68 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Limch1Q3UH68 Bad-203ENSMUST00000113426 740 ntTSL 5 BASIC17■□□□□ 0.31
Limch1Q3UH68 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Limch1Q3UH68 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC17■□□□□ 0.31
Limch1Q3UH68 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC17■□□□□ 0.31
Limch1Q3UH68 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
Limch1Q3UH68 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC17■□□□□ 0.31
Limch1Q3UH68 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC17■□□□□ 0.31
Limch1Q3UH68 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC17■□□□□ 0.31
Limch1Q3UH68 CT025555.1-201ENSMUST00000225901 1217 ntBASIC17■□□□□ 0.31
Limch1Q3UH68 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Limch1Q3UH68 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Limch1Q3UH68 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Limch1Q3UH68 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC17■□□□□ 0.31
Limch1Q3UH68 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
Limch1Q3UH68 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
Limch1Q3UH68 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Limch1Q3UH68 AC167013.2-201ENSMUST00000228520 2684 ntBASIC17■□□□□ 0.31
Limch1Q3UH68 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
Limch1Q3UH68 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Limch1Q3UH68 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Limch1Q3UH68 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Limch1Q3UH68 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Limch1Q3UH68 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Limch1Q3UH68 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Limch1Q3UH68 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Limch1Q3UH68 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Limch1Q3UH68 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Limch1Q3UH68 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Limch1Q3UH68 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Limch1Q3UH68 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Limch1Q3UH68 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
Limch1Q3UH68 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Limch1Q3UH68 Gm37912-201ENSMUST00000191895 3076 ntBASIC16.99■□□□□ 0.31
Limch1Q3UH68 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Limch1Q3UH68 Gm22065-201ENSMUST00000103753 110 ntBASIC16.99■□□□□ 0.31
Limch1Q3UH68 Gm22066-201ENSMUST00000103761 110 ntBASIC16.99■□□□□ 0.31
Limch1Q3UH68 Gm24932-201ENSMUST00000103763 110 ntBASIC16.99■□□□□ 0.31
Limch1Q3UH68 Gm24115-201ENSMUST00000103799 110 ntBASIC16.99■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms