Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Usp39Q3TIX9 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp39Q3TIX9 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Usp39Q3TIX9 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp39Q3TIX9 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp39Q3TIX9 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp39Q3TIX9 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp39Q3TIX9 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp39Q3TIX9 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp39Q3TIX9 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp39Q3TIX9 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
Usp39Q3TIX9 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Usp39Q3TIX9 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC14.02□□□□□ -0.16
Usp39Q3TIX9 AC131743.5-201ENSMUST00000220775 1618 ntBASIC14.02□□□□□ -0.16
Usp39Q3TIX9 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Usp39Q3TIX9 Adgrb2-202ENSMUST00000097868 4635 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Usp39Q3TIX9 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Gm13464-201ENSMUST00000119418 935 ntBASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Gm9726-201ENSMUST00000180321 678 ntBASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Bloc1s5-203ENSMUST00000224902 612 ntBASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Usp39Q3TIX9 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Gm5648-201ENSMUST00000122244 1587 ntBASIC14.01□□□□□ -0.17
Usp39Q3TIX9 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Gm10710-201ENSMUST00000047876 3971 ntBASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Elf4-202ENSMUST00000114958 6088 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Usp39Q3TIX9 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Usp39Q3TIX9 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Usp39Q3TIX9 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC14□□□□□ -0.17
Usp39Q3TIX9 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Usp39Q3TIX9 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Usp39Q3TIX9 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC14□□□□□ -0.17
Usp39Q3TIX9 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC14□□□□□ -0.17
Usp39Q3TIX9 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Usp39Q3TIX9 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Usp39Q3TIX9 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Usp39Q3TIX9 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Usp39Q3TIX9 Gm11873-201ENSMUST00000117877 1304 ntBASIC14□□□□□ -0.17
Usp39Q3TIX9 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Usp39Q3TIX9 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC14□□□□□ -0.17
Usp39Q3TIX9 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC14□□□□□ -0.17
Usp39Q3TIX9 Gm4995-201ENSMUST00000117247 432 ntBASIC14□□□□□ -0.17
Usp39Q3TIX9 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC14□□□□□ -0.17
Usp39Q3TIX9 Gm15706-201ENSMUST00000139612 899 ntTSL 2 BASIC14□□□□□ -0.17
Usp39Q3TIX9 Gm11025-201ENSMUST00000140773 466 ntBASIC14□□□□□ -0.17
Usp39Q3TIX9 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Usp39Q3TIX9 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms