Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Gm8565-201ENSMUST00000183259 1014 ntBASIC14.86□□□□□ -0.03
Sox9Q04887 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Sox9Q04887 Gm7287-201ENSMUST00000205267 602 ntBASIC14.86□□□□□ -0.03
Sox9Q04887 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sox9Q04887 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Sox9Q04887 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC14.86□□□□□ -0.03
Sox9Q04887 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sox9Q04887 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC14.86□□□□□ -0.03
Sox9Q04887 AC154276.1-201ENSMUST00000228874 1299 ntBASIC14.86□□□□□ -0.03
Sox9Q04887 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sox9Q04887 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Sox9Q04887 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sox9Q04887 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sox9Q04887 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sox9Q04887 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sox9Q04887 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sox9Q04887 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sox9Q04887 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sox9Q04887 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Sox9Q04887 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC14.86□□□□□ -0.03
Sox9Q04887 Gm45667-201ENSMUST00000210380 1316 ntBASIC14.86□□□□□ -0.03
Sox9Q04887 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sox9Q04887 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Sox9Q04887 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Sox9Q04887 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Sox9Q04887 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Nkain2-203ENSMUST00000191234 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC14.85□□□□□ -0.03
Sox9Q04887 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC14.85□□□□□ -0.03
Sox9Q04887 Gm867-202ENSMUST00000219979 714 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
Sox9Q04887 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Sox9Q04887 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC14.85□□□□□ -0.03
Sox9Q04887 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Sox9Q04887 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 AL645783.1-201ENSMUST00000221416 1832 ntBASIC14.85□□□□□ -0.03
Sox9Q04887 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Sox9Q04887 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Sox9Q04887 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sox9Q04887 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Sox9Q04887 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Sox9Q04887 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Sox9Q04887 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sox9Q04887 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC14.84□□□□□ -0.03
Sox9Q04887 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sox9Q04887 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sox9Q04887 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
Sox9Q04887 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Sox9Q04887 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sox9Q04887 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC14.84□□□□□ -0.03
Sox9Q04887 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Sox9Q04887 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Sox9Q04887 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sox9Q04887 Maged1-201ENSMUST00000026142 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sox9Q04887 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Sox9Q04887 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Sox9Q04887 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Sox9Q04887 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sox9Q04887 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sox9Q04887 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sox9Q04887 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Sox9Q04887 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Sox9Q04887 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Sox9Q04887 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Sox9Q04887 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Sox9Q04887 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Sox9Q04887 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Sox9Q04887 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Sox9Q04887 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Sox9Q04887 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Sox9Q04887 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Sox9Q04887 Gm42901-201ENSMUST00000197735 3171 ntBASIC14.83□□□□□ -0.04
Sox9Q04887 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Sox9Q04887 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC14.83□□□□□ -0.04
Sox9Q04887 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC14.83□□□□□ -0.04
Sox9Q04887 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC14.83□□□□□ -0.04
Sox9Q04887 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC14.83□□□□□ -0.04
Sox9Q04887 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Sox9Q04887 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC14.83□□□□□ -0.04
Sox9Q04887 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC14.83□□□□□ -0.04
Sox9Q04887 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC14.83□□□□□ -0.04
Sox9Q04887 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC14.83□□□□□ -0.04
Sox9Q04887 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Sox9Q04887 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms