Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col6a1Q04857 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Col6a1Q04857 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Col6a1Q04857 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Col6a1Q04857 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col6a1Q04857 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Col6a1Q04857 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC15.94■□□□□ 0.14
Col6a1Q04857 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Col6a1Q04857 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
Col6a1Q04857 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col6a1Q04857 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col6a1Q04857 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col6a1Q04857 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
Col6a1Q04857 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Col6a1Q04857 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
Col6a1Q04857 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
Col6a1Q04857 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC15.93■□□□□ 0.14
Col6a1Q04857 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col6a1Q04857 Gm5479-201ENSMUST00000160578 435 ntBASIC15.93■□□□□ 0.14
Col6a1Q04857 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC15.93■□□□□ 0.14
Col6a1Q04857 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC15.93■□□□□ 0.14
Col6a1Q04857 Gm45331-201ENSMUST00000209868 554 ntBASIC15.93■□□□□ 0.14
Col6a1Q04857 AC155286.1-201ENSMUST00000218632 448 ntBASIC15.93■□□□□ 0.14
Col6a1Q04857 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC15.93■□□□□ 0.14
Col6a1Q04857 CT030657.3-201ENSMUST00000222707 1200 ntBASIC15.93■□□□□ 0.14
Col6a1Q04857 AC159006.1-201ENSMUST00000226396 258 ntBASIC15.93■□□□□ 0.14
Col6a1Q04857 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC15.93■□□□□ 0.14
Col6a1Q04857 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col6a1Q04857 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col6a1Q04857 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col6a1Q04857 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col6a1Q04857 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col6a1Q04857 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Col6a1Q04857 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col6a1Q04857 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col6a1Q04857 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col6a1Q04857 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col6a1Q04857 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col6a1Q04857 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col6a1Q04857 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col6a1Q04857 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Washc1-201ENSMUST00000072383 2904 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Fam83g-202ENSMUST00000093019 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC15.92■□□□□ 0.14
Col6a1Q04857 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Trav4-2-201ENSMUST00000103637 370 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Col6a1Q04857 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm29310-201ENSMUST00000185468 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm21825-201ENSMUST00000185728 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm29109-201ENSMUST00000185895 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm21896-201ENSMUST00000186520 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm21873-201ENSMUST00000186728 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm21794-201ENSMUST00000187056 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm21880-201ENSMUST00000187275 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm21826-201ENSMUST00000187451 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Mturn-202ENSMUST00000187701 503 ntTSL 5 BASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm21198-201ENSMUST00000188393 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm21749-201ENSMUST00000189343 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm21901-201ENSMUST00000189568 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm29424-201ENSMUST00000189716 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm28599-201ENSMUST00000189838 694 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm21867-201ENSMUST00000189917 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm29269-201ENSMUST00000190087 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm21722-201ENSMUST00000190153 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm28423-201ENSMUST00000190701 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm21899-201ENSMUST00000190745 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm21910-201ENSMUST00000191163 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm21849-201ENSMUST00000191571 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm28678-201ENSMUST00000191593 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm20910-201ENSMUST00000193268 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Gm21871-201ENSMUST00000194621 696 ntBASIC15.92■□□□□ 0.14
Col6a1Q04857 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC15.92■□□□□ 0.14
Col6a1Q04857 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Col6a1Q04857 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC15.92■□□□□ 0.14
Col6a1Q04857 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
Col6a1Q04857 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
Col6a1Q04857 Chmp4c-201ENSMUST00000029049 6188 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col6a1Q04857 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC15.91■□□□□ 0.14
Col6a1Q04857 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col6a1Q04857 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col6a1Q04857 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col6a1Q04857 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms