Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
Hmgb1P63158 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Hmgb1P63158 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Hmgb1P63158 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Hmgb1P63158 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC15.92■□□□□ 0.14
Hmgb1P63158 Ccnj-201ENSMUST00000025983 3819 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Hmgb1P63158 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Hmgb1P63158 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Hmgb1P63158 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC15.91■□□□□ 0.14
Hmgb1P63158 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC15.91■□□□□ 0.14
Hmgb1P63158 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Hmgb1P63158 Gm45098-201ENSMUST00000207179 657 ntBASIC15.91■□□□□ 0.14
Hmgb1P63158 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC15.91■□□□□ 0.14
Hmgb1P63158 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Hmgb1P63158 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Hmgb1P63158 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Hmgb1P63158 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Hmgb1P63158 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Hmgb1P63158 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Hmgb1P63158 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Hmgb1P63158 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
Hmgb1P63158 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Hmgb1P63158 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC15.9■□□□□ 0.14
Hmgb1P63158 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
Hmgb1P63158 Psmb5-202ENSMUST00000227257 622 ntBASIC15.9■□□□□ 0.14
Hmgb1P63158 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Hmgb1P63158 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC15.9■□□□□ 0.14
Hmgb1P63158 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Hmgb1P63158 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC15.9■□□□□ 0.14
Hmgb1P63158 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Hmgb1P63158 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Hmgb1P63158 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC15.89■□□□□ 0.13
Hmgb1P63158 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Hmgb1P63158 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Hmgb1P63158 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Lurap1l-201ENSMUST00000055922 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Hmgb1P63158 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Ksr1-207ENSMUST00000226282 5260 ntBASIC15.89■□□□□ 0.13
Hmgb1P63158 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Hmgb1P63158 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
Hmgb1P63158 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Hmgb1P63158 Ccp110-202ENSMUST00000106557 5073 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Hmgb1P63158 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Hmgb1P63158 Gm45630-201ENSMUST00000210243 1911 ntBASIC15.88■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 57.1 ms