Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
Rfx1P48377 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC17.29■□□□□ 0.36
Rfx1P48377 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 Gm43935-201ENSMUST00000203569 1050 ntBASIC17.29■□□□□ 0.36
Rfx1P48377 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 Rnf150-201ENSMUST00000078525 9682 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Rfx1P48377 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC17.29■□□□□ 0.36
Rfx1P48377 Insr-201ENSMUST00000091291 9355 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
Rfx1P48377 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC17.29■□□□□ 0.36
Rfx1P48377 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
Rfx1P48377 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Rfx1P48377 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Rfx1P48377 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Gm5639-201ENSMUST00000122305 2403 ntBASIC17.28■□□□□ 0.36
Rfx1P48377 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC17.28■□□□□ 0.36
Rfx1P48377 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Rfx1P48377 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC17.28■□□□□ 0.36
Rfx1P48377 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC17.28■□□□□ 0.36
Rfx1P48377 Gm7787-201ENSMUST00000216858 688 ntBASIC17.28■□□□□ 0.36
Rfx1P48377 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Gm37411-201ENSMUST00000194180 2282 ntBASIC17.28■□□□□ 0.36
Rfx1P48377 Mcur1-201ENSMUST00000021800 4339 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Rfx1P48377 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC17.28■□□□□ 0.36
Rfx1P48377 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Rfx1P48377 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Rfx1P48377 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Rfx1P48377 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Rfx1P48377 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC17.27■□□□□ 0.36
Rfx1P48377 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rfx1P48377 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rfx1P48377 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Rfx1P48377 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Rfx1P48377 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rfx1P48377 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rfx1P48377 Gm8749-201ENSMUST00000117737 331 ntBASIC17.27■□□□□ 0.36
Rfx1P48377 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC17.27■□□□□ 0.36
Rfx1P48377 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Rfx1P48377 Vdac2-209ENSMUST00000173456 956 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Rfx1P48377 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC17.27■□□□□ 0.36
Rfx1P48377 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
Rfx1P48377 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rfx1P48377 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Rfx1P48377 Kctd14-206ENSMUST00000206658 2339 ntAPPRIS P3 TSL 3 BASIC17.27■□□□□ 0.35
Rfx1P48377 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
Rfx1P48377 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Rfx1P48377 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.35
Rfx1P48377 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Stip1-201ENSMUST00000025918 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Rfx1P48377 R3hcc1-202ENSMUST00000121142 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Rfx1P48377 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Rfx1P48377 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
Rfx1P48377 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC17.26■□□□□ 0.35
Rfx1P48377 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Gm4899-201ENSMUST00000178708 719 ntBASIC17.26■□□□□ 0.35
Rfx1P48377 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC17.26■□□□□ 0.35
Rfx1P48377 AC155729.1-201ENSMUST00000227758 544 ntBASIC17.26■□□□□ 0.35
Rfx1P48377 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Rfx1P48377 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms