Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Col18a1P39061 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col18a1P39061 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col18a1P39061 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col18a1P39061 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Col18a1P39061 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col18a1P39061 Ap4e1-203ENSMUST00000110394 2271 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col18a1P39061 Gm11439-201ENSMUST00000118598 409 ntBASIC18.78■□□□□ 0.6
Col18a1P39061 Mir6979-201ENSMUST00000183927 56 ntBASIC18.78■□□□□ 0.6
Col18a1P39061 Gm29741-201ENSMUST00000192667 421 ntBASIC18.78■□□□□ 0.6
Col18a1P39061 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC18.78■□□□□ 0.6
Col18a1P39061 CT030704.2-201ENSMUST00000228887 494 ntBASIC18.78■□□□□ 0.6
Col18a1P39061 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col18a1P39061 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col18a1P39061 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col18a1P39061 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col18a1P39061 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col18a1P39061 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col18a1P39061 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col18a1P39061 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col18a1P39061 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col18a1P39061 Coasy-201ENSMUST00000001806 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col18a1P39061 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC18.78■□□□□ 0.6
Col18a1P39061 Rab15-204ENSMUST00000122419 856 ntTSL 5 BASIC18.78■□□□□ 0.6
Col18a1P39061 Gm7809-201ENSMUST00000153199 742 ntBASIC18.78■□□□□ 0.6
Col18a1P39061 Gm22334-201ENSMUST00000158070 133 ntBASIC18.78■□□□□ 0.6
Col18a1P39061 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC18.78■□□□□ 0.6
Col18a1P39061 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC18.78■□□□□ 0.6
Col18a1P39061 Gm44064-201ENSMUST00000204964 1087 ntBASIC18.78■□□□□ 0.6
Col18a1P39061 CT573086.1-201ENSMUST00000227202 1074 ntBASIC18.78■□□□□ 0.6
Col18a1P39061 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col18a1P39061 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col18a1P39061 AC115735.4-201ENSMUST00000227460 1944 ntBASIC18.77■□□□□ 0.6
Col18a1P39061 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC18.77■□□□□ 0.6
Col18a1P39061 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col18a1P39061 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col18a1P39061 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Col18a1P39061 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col18a1P39061 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col18a1P39061 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC18.77■□□□□ 0.6
Col18a1P39061 B9d1os-201ENSMUST00000137010 674 ntBASIC18.77■□□□□ 0.6
Col18a1P39061 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC18.77■□□□□ 0.6
Col18a1P39061 Gm24990-201ENSMUST00000157406 323 ntBASIC18.77■□□□□ 0.6
Col18a1P39061 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col18a1P39061 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col18a1P39061 Gm37166-201ENSMUST00000195473 2474 ntBASIC18.77■□□□□ 0.6
Col18a1P39061 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col18a1P39061 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col18a1P39061 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC18.77■□□□□ 0.59
Col18a1P39061 Gm8793-201ENSMUST00000183069 1303 ntBASIC18.77■□□□□ 0.59
Col18a1P39061 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col18a1P39061 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC18.77■□□□□ 0.59
Col18a1P39061 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 Asb3-206ENSMUST00000203878 1813 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Col18a1P39061 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Col18a1P39061 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC18.76■□□□□ 0.59
Col18a1P39061 Mir5120-201ENSMUST00000175020 78 ntBASIC18.76■□□□□ 0.59
Col18a1P39061 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC18.76■□□□□ 0.59
Col18a1P39061 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Col18a1P39061 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 Gm9347-201ENSMUST00000211473 1607 ntBASIC18.76■□□□□ 0.59
Col18a1P39061 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Col18a1P39061 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 Gm12403-201ENSMUST00000121384 959 ntBASIC18.76■□□□□ 0.59
Col18a1P39061 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 Gm4335-201ENSMUST00000182581 1004 ntBASIC18.76■□□□□ 0.59
Col18a1P39061 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC18.76■□□□□ 0.59
Col18a1P39061 Mybphl-201ENSMUST00000090563 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col18a1P39061 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC18.75■□□□□ 0.59
Col18a1P39061 Taf15-201ENSMUST00000021018 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 2310022A10Rik-204ENSMUST00000187032 1871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC18.75■□□□□ 0.59
Col18a1P39061 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Col18a1P39061 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC18.75■□□□□ 0.59
Col18a1P39061 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col18a1P39061 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms