Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC11.85□□□□□ -0.51
Sdc1P18828 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sdc1P18828 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
Sdc1P18828 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sdc1P18828 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sdc1P18828 Gm8344-201ENSMUST00000119813 856 ntBASIC11.85□□□□□ -0.51
Sdc1P18828 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Sdc1P18828 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sdc1P18828 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC11.85□□□□□ -0.51
Sdc1P18828 Krtap5-1-202ENSMUST00000188274 742 ntBASIC11.85□□□□□ -0.51
Sdc1P18828 AC125350.1-201ENSMUST00000225115 903 ntBASIC11.85□□□□□ -0.51
Sdc1P18828 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sdc1P18828 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC11.85□□□□□ -0.51
Sdc1P18828 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sdc1P18828 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sdc1P18828 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sdc1P18828 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Sdc1P18828 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sdc1P18828 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC11.85□□□□□ -0.51
Sdc1P18828 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sdc1P18828 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sdc1P18828 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sdc1P18828 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sdc1P18828 Hcrtr1-201ENSMUST00000030562 2187 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sdc1P18828 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Sdc1P18828 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Sdc1P18828 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC11.85□□□□□ -0.51
Sdc1P18828 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sdc1P18828 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC11.85□□□□□ -0.51
Sdc1P18828 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Sdc1P18828 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC11.85□□□□□ -0.51
Sdc1P18828 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Sdc1P18828 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Sdc1P18828 Elk3-201ENSMUST00000008542 4212 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Sdc1P18828 Sema4a-214ENSMUST00000166237 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Sdc1P18828 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC11.84□□□□□ -0.51
Sdc1P18828 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Sdc1P18828 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC11.84□□□□□ -0.51
Sdc1P18828 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Sdc1P18828 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Sdc1P18828 AC154262.2-201ENSMUST00000224310 2293 ntBASIC11.84□□□□□ -0.51
Sdc1P18828 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC11.84□□□□□ -0.51
Sdc1P18828 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Gm37861-201ENSMUST00000193534 2869 ntBASIC11.84□□□□□ -0.51
Sdc1P18828 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Sdc1P18828 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC11.84□□□□□ -0.51
Sdc1P18828 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC11.84□□□□□ -0.51
Sdc1P18828 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC11.84□□□□□ -0.51
Sdc1P18828 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC11.84□□□□□ -0.51
Sdc1P18828 Gm9172-201ENSMUST00000212092 954 ntBASIC11.84□□□□□ -0.51
Sdc1P18828 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Sdc1P18828 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Dusp23-201ENSMUST00000027826 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Sdc1P18828 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sdc1P18828 AC139054.1-201ENSMUST00000226898 1598 ntBASIC11.84□□□□□ -0.51
Sdc1P18828 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Sdc1P18828 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC11.83□□□□□ -0.52
Sdc1P18828 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Gm37411-201ENSMUST00000194180 2282 ntBASIC11.83□□□□□ -0.52
Sdc1P18828 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC11.83□□□□□ -0.52
Sdc1P18828 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC11.83□□□□□ -0.52
Sdc1P18828 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sdc1P18828 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC11.83□□□□□ -0.52
Sdc1P18828 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC11.83□□□□□ -0.52
Sdc1P18828 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms