Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm19658-201ENSMUST00000196231 138 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 Gm44367-201ENSMUST00000196836 138 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 Gm44350-201ENSMUST00000197197 138 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 Gm44390-201ENSMUST00000197533 144 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 Gm44313-201ENSMUST00000198018 138 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 Gm44486-201ENSMUST00000198508 138 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 Gm44314-201ENSMUST00000199263 138 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 Gm44394-201ENSMUST00000199558 138 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 Gm44484-201ENSMUST00000199873 138 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 Gm44466-201ENSMUST00000200264 138 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 Gm44359-201ENSMUST00000200671 138 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 AC127349.1-201ENSMUST00000224590 266 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC11.7□□□□□ -0.54
Cdx1P18111 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Cdx1P18111 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC11.7□□□□□ -0.54
Cdx1P18111 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC11.7□□□□□ -0.54
Cdx1P18111 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Ssr1-204ENSMUST00000225319 1610 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Cdx1P18111 Gm11405-201ENSMUST00000118689 1556 ntBASIC11.7□□□□□ -0.54
Cdx1P18111 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx1P18111 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Cdx1P18111 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Cdx1P18111 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC11.69□□□□□ -0.54
Cdx1P18111 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
Cdx1P18111 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Gm43195-201ENSMUST00000200614 2332 ntBASIC11.69□□□□□ -0.54
Cdx1P18111 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Clec11a-201ENSMUST00000004587 2978 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Cdx1P18111 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Cdx1P18111 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC11.69□□□□□ -0.54
Cdx1P18111 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC11.69□□□□□ -0.54
Cdx1P18111 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC11.69□□□□□ -0.54
Cdx1P18111 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Gm27525-201ENSMUST00000184465 107 ntBASIC11.69□□□□□ -0.54
Cdx1P18111 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 AC132104.2-201ENSMUST00000215011 266 ntBASIC11.69□□□□□ -0.54
Cdx1P18111 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC11.69□□□□□ -0.54
Cdx1P18111 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Cdx1P18111 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Cdx1P18111 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Cdx1P18111 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC11.69□□□□□ -0.54
Cdx1P18111 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Adarb1-201ENSMUST00000020496 6549 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Gm15442-201ENSMUST00000117905 1527 ntBASIC11.69□□□□□ -0.54
Cdx1P18111 Klhl12-203ENSMUST00000116528 3277 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
Cdx1P18111 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC11.69□□□□□ -0.54
Cdx1P18111 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Cdx1P18111 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdx1P18111 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdx1P18111 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdx1P18111 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdx1P18111 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdx1P18111 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Cdx1P18111 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdx1P18111 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdx1P18111 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdx1P18111 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdx1P18111 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdx1P18111 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdx1P18111 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdx1P18111 Tcf4-210ENSMUST00000128706 2066 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Cdx1P18111 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdx1P18111 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Cdx1P18111 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms