Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC13.74□□□□□ -0.21
Msx1P13297 Rbfox2-208ENSMUST00000227930 1218 ntBASIC13.74□□□□□ -0.21
Msx1P13297 Crisp4-201ENSMUST00000026876 1252 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Msx1P13297 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Msx1P13297 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Msx1P13297 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Msx1P13297 Adamts15-201ENSMUST00000065112 5928 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Msx1P13297 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Msx1P13297 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Msx1P13297 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
Msx1P13297 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Msx1P13297 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
Msx1P13297 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Msx1P13297 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC13.74□□□□□ -0.21
Msx1P13297 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Msx1P13297 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
Msx1P13297 Card9-201ENSMUST00000028294 1880 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Msx1P13297 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
Msx1P13297 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Msx1P13297 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Msx1P13297 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Msx1P13297 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
Msx1P13297 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Msx1P13297 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Msx1P13297 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Msx1P13297 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Msx1P13297 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC13.73□□□□□ -0.21
Msx1P13297 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Msx1P13297 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Msx1P13297 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC13.73□□□□□ -0.21
Msx1P13297 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC13.73□□□□□ -0.21
Msx1P13297 Tbata-210ENSMUST00000151886 915 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Msx1P13297 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Msx1P13297 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC13.73□□□□□ -0.21
Msx1P13297 Gm25144-201ENSMUST00000179561 110 ntBASIC13.73□□□□□ -0.21
Msx1P13297 Gm25352-201ENSMUST00000179815 110 ntBASIC13.73□□□□□ -0.21
Msx1P13297 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC13.73□□□□□ -0.21
Msx1P13297 Gm7730-201ENSMUST00000212486 454 ntBASIC13.73□□□□□ -0.21
Msx1P13297 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC13.73□□□□□ -0.21
Msx1P13297 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC13.73□□□□□ -0.21
Msx1P13297 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Msx1P13297 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Msx1P13297 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Msx1P13297 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Msx1P13297 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Msx1P13297 BC005537-201ENSMUST00000019276 5849 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Msx1P13297 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC13.73□□□□□ -0.21
Msx1P13297 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Msx1P13297 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Msx1P13297 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Msx1P13297 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Msx1P13297 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Msx1P13297 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC13.73□□□□□ -0.21
Msx1P13297 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Msx1P13297 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Msx1P13297 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Msx1P13297 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Msx1P13297 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Msx1P13297 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Msx1P13297 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Msx1P13297 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Msx1P13297 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Msx1P13297 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Msx1P13297 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC13.72□□□□□ -0.21
Msx1P13297 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Msx1P13297 Gm7488-201ENSMUST00000117148 684 ntBASIC13.72□□□□□ -0.21
Msx1P13297 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC13.72□□□□□ -0.21
Msx1P13297 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Msx1P13297 4930513D17Rik-203ENSMUST00000202800 1159 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Msx1P13297 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Msx1P13297 Olfr1460-ps1-201ENSMUST00000208975 899 ntBASIC13.72□□□□□ -0.21
Msx1P13297 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Msx1P13297 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
Msx1P13297 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Msx1P13297 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC13.72□□□□□ -0.21
Msx1P13297 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Msx1P13297 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Msx1P13297 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
Msx1P13297 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Msx1P13297 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Msx1P13297 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Msx1P13297 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
Msx1P13297 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Msx1P13297 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
Msx1P13297 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Msx1P13297 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC13.71□□□□□ -0.21
Msx1P13297 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Msx1P13297 AC135669.1-201ENSMUST00000213585 412 ntBASIC13.71□□□□□ -0.21
Msx1P13297 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms