Protein–RNA interactions for Protein: O35188

Cx3cl1, Fractalkine, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cx3cl1O35188 Gm45098-201ENSMUST00000207179 657 ntBASIC13.6□□□□□ -0.23
Cx3cl1O35188 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cx3cl1O35188 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cx3cl1O35188 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cx3cl1O35188 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cx3cl1O35188 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cx3cl1O35188 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC13.6□□□□□ -0.23
Cx3cl1O35188 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cx3cl1O35188 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cx3cl1O35188 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cx3cl1O35188 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cx3cl1O35188 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cx3cl1O35188 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cx3cl1O35188 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cx3cl1O35188 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cx3cl1O35188 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Cx3cl1O35188 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Gm45546-201ENSMUST00000211053 2394 ntBASIC13.59□□□□□ -0.23
Cx3cl1O35188 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Olfr286-202ENSMUST00000205305 969 ntBASIC13.59□□□□□ -0.23
Cx3cl1O35188 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC13.59□□□□□ -0.23
Cx3cl1O35188 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
Cx3cl1O35188 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Cx3cl1O35188 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
Cx3cl1O35188 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Cx3cl1O35188 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Cx3cl1O35188 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.23
Cx3cl1O35188 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.23
Cx3cl1O35188 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
Cx3cl1O35188 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC13.58□□□□□ -0.24
Cx3cl1O35188 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC13.58□□□□□ -0.24
Cx3cl1O35188 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Cx3cl1O35188 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Gm42632-201ENSMUST00000201707 2411 ntBASIC13.58□□□□□ -0.24
Cx3cl1O35188 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Cx3cl1O35188 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC13.57□□□□□ -0.24
Cx3cl1O35188 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cx3cl1O35188 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Cx3cl1O35188 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cx3cl1O35188 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Cx3cl1O35188 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Cx3cl1O35188 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms