Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 AV026068-213ENSMUST00000223675 1171 ntBASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Lima1Q9ERG0 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Itgav-201ENSMUST00000028499 7054 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Lima1Q9ERG0 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Dmkn-205ENSMUST00000165887 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Gm5184-201ENSMUST00000220417 1702 ntBASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Lima1Q9ERG0 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 AC164567.1-201ENSMUST00000219185 960 ntBASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Lmna-202ENSMUST00000036252 1536 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Sall2-202ENSMUST00000135523 4773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Gm42769-201ENSMUST00000198576 1659 ntBASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 AC126250.1-201ENSMUST00000228343 1768 ntBASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC14.29□□□□□ -0.12
Lima1Q9ERG0 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms